Strain Fitness in Shewanella amazonensis SB2B around Sama_1073

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
1,298,707	-	rdgC	Sama_1072	0.25	+0.1
1,298,707	-	rdgC	Sama_1072	0.25	+1.5
1,298,777	+	rdgC	Sama_1072	0.33	+0.3
1,298,777	+	rdgC	Sama_1072	0.33	+0.7
1,298,801	+	rdgC	Sama_1072	0.35	+1.0
1,298,801	+	rdgC	Sama_1072	0.35	+1.2
1,298,802	-	rdgC	Sama_1072	0.36	+0.4
1,298,826	-	rdgC	Sama_1072	0.38	+0.3
1,298,867	+	rdgC	Sama_1072	0.43	+1.0
1,298,867	+	rdgC	Sama_1072	0.43	-0.3
1,298,868	-	rdgC	Sama_1072	0.43	+0.7
1,298,868	-	rdgC	Sama_1072	0.43	-2.3
1,298,868	-	rdgC	Sama_1072	0.43	+1.6
1,298,868	-	rdgC	Sama_1072	0.43	+1.5
1,298,868	-	rdgC	Sama_1072	0.43	+0.4
1,298,901	+	rdgC	Sama_1072	0.46	-1.6
1,298,902	-	rdgC	Sama_1072	0.46	+1.1
1,298,902	-	rdgC	Sama_1072	0.46	+1.8
1,298,902	-	rdgC	Sama_1072	0.46	+1.2
1,298,928	-	rdgC	Sama_1072	0.49	+0.4
1,298,928	-	rdgC	Sama_1072	0.49	+0.2
1,298,928	-	rdgC	Sama_1072	0.49	+1.2
1,298,988	-	rdgC	Sama_1072	0.56	-0.8
1,299,243	-	rdgC	Sama_1072	0.84	+0.3
1,299,270	-	rdgC	Sama_1072	0.87	-1.0
1,299,270	-	rdgC	Sama_1072	0.87	+0.6
1,299,270	-	rdgC	Sama_1072	0.87	+0.9
1,299,339	+				+0.0
1,299,339	+				+1.1
1,299,339	+				+1.7
1,299,340	-				+1.4
1,299,365	-				+0.7
1,299,389	+				+0.0
1,299,389	+				+1.1
1,299,389	+				-0.1
1,299,389	+				+0.1
1,299,389	+				-0.1
1,299,389	+				+0.7
1,299,390	-				+0.7
1,299,390	-				+1.2
1,299,390	-				+0.9
1,299,390	-				+0.4
1,299,390	-				-2.6
1,299,390	-				-0.6
1,299,390	-				+0.7
1,299,423	+				+0.0
1,299,423	+				+0.5
1,299,424	-				+0.3
1,299,424	-				+0.0
1,299,424	-				+1.2
1,299,424	-				+0.7
1,299,424	-				+0.1
1,299,526	-				-0.4
1,299,587	-				-0.6
1,299,587	-				+0.3
1,299,679	+				-0.1
1,299,679	+				+1.2
1,299,680	-				-0.7
1,299,765	-				+0.1
1,299,765	-				+0.3
1,299,765	-				-1.1
1,299,772	+				-0.1
1,299,777	+		Sama_1073	0.10	-0.1
1,299,788	+		Sama_1073	0.11	-0.3
1,299,788	+		Sama_1073	0.11	+1.3
1,299,788	+		Sama_1073	0.11	+0.7
1,299,788	+		Sama_1073	0.11	+0.0
1,299,788	+		Sama_1073	0.11	-0.4
1,299,788	+		Sama_1073	0.11	+0.1
1,299,789	-		Sama_1073	0.12	-0.5
1,299,794	+		Sama_1073	0.12	+0.3
1,299,794	+		Sama_1073	0.12	-2.1
1,299,794	+		Sama_1073	0.12	-0.3
1,299,794	+		Sama_1073	0.12	+0.1
1,299,795	-		Sama_1073	0.12	+1.1
1,299,795	-		Sama_1073	0.12	-0.3
1,299,795	-		Sama_1073	0.12	+1.5
1,299,830	+		Sama_1073	0.16	+0.3
1,299,830	+		Sama_1073	0.16	+0.7
1,299,833	+		Sama_1073	0.16	-0.1
1,299,833	+		Sama_1073	0.16	-0.3
1,299,834	-		Sama_1073	0.16	+0.0
1,299,834	-		Sama_1073	0.16	-0.3
1,299,834	-		Sama_1073	0.16	+1.3
1,299,901	+		Sama_1073	0.24	-0.6
1,299,913	+		Sama_1073	0.25	+0.3
1,299,914	-		Sama_1073	0.25	-1.8
1,300,123	+		Sama_1073	0.48	-0.8
1,300,123	+		Sama_1073	0.48	+0.3
1,300,123	+		Sama_1073	0.48	+1.3
1,300,123	+		Sama_1073	0.48	-1.0
1,300,124	-		Sama_1073	0.48	+0.4
1,300,161	+		Sama_1073	0.52	+0.3
1,300,161	+		Sama_1073	0.52	+0.1
1,300,162	-		Sama_1073	0.52	+1.1
1,300,162	-		Sama_1073	0.52	+0.7
1,300,162	-		Sama_1073	0.52	-2.0
1,300,165	+		Sama_1073	0.52	-1.8
1,300,165	+		Sama_1073	0.52	-0.3
1,300,165	+		Sama_1073	0.52	+0.2
1,300,165	+		Sama_1073	0.52	-0.8
1,300,166	-		Sama_1073	0.52	+1.1
1,300,166	-		Sama_1073	0.52	-0.6
1,300,166	-		Sama_1073	0.52	-0.7
1,300,225	+		Sama_1073	0.59	+0.5
1,300,225	+		Sama_1073	0.59	-0.6
1,300,225	+		Sama_1073	0.59	-2.3
1,300,225	+		Sama_1073	0.59	+0.1
1,300,226	-		Sama_1073	0.59	+0.6
1,300,226	-		Sama_1073	0.59	+1.1
1,300,226	-		Sama_1073	0.59	-1.1
1,300,226	-		Sama_1073	0.59	+0.2
1,300,226	-		Sama_1073	0.59	+0.5
1,300,226	-		Sama_1073	0.59	+0.1
1,300,226	-		Sama_1073	0.59	+0.3
1,300,259	-		Sama_1073	0.62	+0.0
1,300,259	-		Sama_1073	0.62	+0.7
1,300,273	+		Sama_1073	0.64	-0.8
1,300,273	+		Sama_1073	0.64	+0.1
1,300,286	+		Sama_1073	0.65	+2.1
1,300,286	+		Sama_1073	0.65	-2.1
1,300,286	+		Sama_1073	0.65	-0.3
1,300,286	+		Sama_1073	0.65	-1.8
1,300,295	-		Sama_1073	0.66	-0.4
1,300,350	+		Sama_1073	0.72	+0.5
1,300,350	+		Sama_1073	0.72	-0.2
1,300,350	+		Sama_1073	0.72	+0.7
1,300,350	+		Sama_1073	0.72	+0.4
1,300,350	+		Sama_1073	0.72	+0.4
1,300,350	+		Sama_1073	0.72	+0.7
1,300,350	+		Sama_1073	0.72	+0.5
1,300,350	+		Sama_1073	0.72	-0.3
1,300,350	+		Sama_1073	0.72	+0.2
1,300,350	+		Sama_1073	0.72	-1.4
1,300,350	+		Sama_1073	0.72	-1.6
1,300,350	+		Sama_1073	0.72	+0.3
1,300,350	+		Sama_1073	0.72	-0.3
1,300,351	-		Sama_1073	0.72	+1.7
1,300,351	-		Sama_1073	0.72	+0.6
1,300,351	-		Sama_1073	0.72	-0.2
1,300,351	-		Sama_1073	0.72	-0.5
1,300,354	+		Sama_1073	0.72	+0.9
1,300,354	+		Sama_1073	0.72	+3.1
1,300,354	+		Sama_1073	0.72	-0.6
1,300,354	+		Sama_1073	0.72	-0.4
1,300,354	+		Sama_1073	0.72	+1.1
1,300,354	+		Sama_1073	0.72	+1.5
1,300,355	-		Sama_1073	0.73	-0.6
1,300,355	-		Sama_1073	0.73	+0.5
1,300,400	-		Sama_1073	0.77	+0.2
1,300,400	-		Sama_1073	0.77	+1.2
1,300,400	-		Sama_1073	0.77	+1.7
1,300,417	+		Sama_1073	0.79	-0.6
1,300,417	+		Sama_1073	0.79	-0.4
1,300,417	+		Sama_1073	0.79	+1.5
1,300,417	+		Sama_1073	0.79	-0.6
1,300,417	+		Sama_1073	0.79	-2.0
1,300,417	+		Sama_1073	0.79	-0.1
1,300,417	+		Sama_1073	0.79	-1.8
1,300,418	-		Sama_1073	0.79	+0.4
1,300,418	-		Sama_1073	0.79	-0.3
1,300,418	-		Sama_1073	0.79	-0.7
1,300,422	+		Sama_1073	0.80	+0.4
1,300,485	+		Sama_1073	0.87	+0.1
1,300,499	-		Sama_1073	0.88	-0.4
1,300,499	-		Sama_1073	0.88	+3.1
1,300,499	-		Sama_1073	0.88	+0.5
1,300,534	+				-0.8
1,300,534	+				+0.6
1,300,534	+				-0.8
1,300,535	-				-0.6
1,300,576	+				+0.9
1,300,576	+				+0.6
1,300,576	+				-0.5
1,300,576	+				+0.3
1,300,576	+				-0.0
1,300,576	+				+0.2
1,300,576	+				+0.0
1,300,577	-				+0.8
1,300,577	-				-0.1
1,300,577	-				+1.1
1,300,577	-				+1.2
1,300,577	-				-0.4
1,300,607	-				+1.1
1,300,658	+				-0.2
1,300,666	+				+0.0
1,300,671	-				-1.7
1,300,671	-				+0.3
1,300,674	+				-0.1
1,300,715	+				-0.1
1,300,716	-				-0.8
1,300,753	+				+0.4
1,300,780	-				+0.3
1,300,927	+		Sama_1074	0.20	-0.3
1,301,095	+		Sama_1074	0.44	-1.3
1,301,095	+		Sama_1074	0.44	+0.2
1,301,096	-		Sama_1074	0.44	+0.0
1,301,096	-		Sama_1074	0.44	+0.6
1,301,096	-		Sama_1074	0.44	+0.2
1,301,096	-		Sama_1074	0.44	+0.2
1,301,096	-		Sama_1074	0.44	+0.9
1,301,097	+		Sama_1074	0.44	+0.7
1,301,097	+		Sama_1074	0.44	-1.8
1,301,097	+		Sama_1074	0.44	+0.0
1,301,097	+		Sama_1074	0.44	+0.3
1,301,097	+		Sama_1074	0.44	-0.2
1,301,097	+		Sama_1074	0.44	+0.7
1,301,097	+		Sama_1074	0.44	+0.5
1,301,097	+		Sama_1074	0.44	+0.7
1,301,098	-		Sama_1074	0.44	-0.3
1,301,098	-		Sama_1074	0.44	+0.5
1,301,098	-		Sama_1074	0.44	+1.1
1,301,098	-		Sama_1074	0.44	-1.1
1,301,098	-		Sama_1074	0.44	+0.5
1,301,100	+		Sama_1074	0.45	-0.4
1,301,100	+		Sama_1074	0.45	+0.5
1,301,100	+		Sama_1074	0.45	-0.3
1,301,100	+		Sama_1074	0.45	+1.2
1,301,101	-		Sama_1074	0.45	-0.4
1,301,101	-		Sama_1074	0.45	-0.1
1,301,101	-		Sama_1074	0.45	+0.5
1,301,147	+		Sama_1074	0.51	+0.2
1,301,147	+		Sama_1074	0.51	+0.0
1,301,148	-		Sama_1074	0.52	+0.2
1,301,148	-		Sama_1074	0.52	+0.6
1,301,241	+		Sama_1074	0.65	-0.4
1,301,242	-		Sama_1074	0.65	-2.2
1,301,253	+		Sama_1074	0.67	+0.5
1,301,253	+		Sama_1074	0.67	-1.6
1,301,290	-		Sama_1074	0.72	+0.2
1,301,311	+		Sama_1074	0.75	-0.9
1,301,312	-		Sama_1074	0.75	+1.0
1,301,356	+		Sama_1074	0.82	+1.3
1,301,356	+		Sama_1074	0.82	+0.2
1,301,356	+		Sama_1074	0.82	+0.3
1,301,356	+		Sama_1074	0.82	-0.3
1,301,356	+		Sama_1074	0.82	+0.3
1,301,357	-		Sama_1074	0.82	-1.7
1,301,357	-		Sama_1074	0.82	+1.2
1,301,360	+		Sama_1074	0.82	+0.0
1,301,361	-		Sama_1074	0.82	+0.2
1,301,361	-		Sama_1074	0.82	+0.4
1,301,361	-		Sama_1074	0.82	+1.1
1,301,375	+		Sama_1074	0.84	+0.2
1,301,375	+		Sama_1074	0.84	-0.3
1,301,375	+		Sama_1074	0.84	-0.7
1,301,375	+		Sama_1074	0.84	-0.8
1,301,375	+		Sama_1074	0.84	+0.7
1,301,376	-		Sama_1074	0.85	+0.7
1,301,376	-		Sama_1074	0.85	-0.1
1,301,500	-				+0.5
1,301,508	-				+0.4
1,301,508	-				+0.5
1,301,512	+				+0.7
1,301,512	+				+0.5
1,301,513	-				+0.1
1,301,513	-				-0.3
1,301,513	-				-0.8
1,301,546	+				+1.3
1,301,546	+				-0.3
1,301,546	+				-0.5
1,301,547	-				-2.1
1,301,548	+				-0.4
1,301,548	+				-0.2
1,301,548	+				+2.9
1,301,548	+				+0.7
1,301,548	+				+0.5
1,301,548	+				+0.3
1,301,548	+				-0.8
1,301,548	+				-0.3
1,301,548	+				-1.2
1,301,548	+				+0.3
1,301,548	+				-1.4
1,301,548	+				+0.7
1,301,548	+				-1.3
1,301,548	+				+0.3
1,301,548	+				+0.2
1,301,548	+				-0.3
1,301,549	-				-0.3
1,301,549	-				+0.2
1,301,549	-				-1.1
1,301,549	-				-2.4
1,301,549	-				+0.2
1,301,549	-				-1.3
1,301,549	-				-0.8
1,301,549	-				+0.2
1,301,549	-				-0.1
1,301,549	-				+0.3
1,301,549	-				-1.0
1,301,549	-				-1.3
1,301,549	-				-0.8
1,301,552	+				+0.0
1,301,552	+				-0.0
1,301,552	+				+1.0
1,301,552	+				+0.3
1,301,552	+				+1.2
1,301,552	+				+0.6
1,301,552	+				-0.1
1,301,552	+				+0.7
1,301,552	+				-0.3
1,301,552	+				-0.8
1,301,552	+				+0.7
1,301,552	+				-0.7
1,301,553	-				-0.3
1,301,553	-				-0.3
1,301,553	-				-0.6
1,301,553	-				-0.0
1,301,553	-				-2.3
1,301,553	-				-2.1
1,301,553	-				-0.6
1,301,553	-				-1.0
1,301,553	-				-0.3
1,301,553	-				-1.6
1,301,553	-				+0.6
1,301,553	-				+0.7
1,301,565	+				-0.3
1,301,565	+				-0.4
1,301,565	+				-2.6
1,301,566	-				-2.1
1,301,601	+				+0.5
1,301,601	+				+0.3
1,301,601	+				+0.7
1,301,602	-				-1.1
1,301,602	-				-1.6
1,301,602	-				+0.1
1,301,602	-				-1.7