Strain Fitness in Shewanella amazonensis SB2B around Sama_0935

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
1,128,111	+		Sama_0933	0.83	-0.4
1,128,112	-		Sama_0933	0.83	-1.0
1,128,119	+		Sama_0933	0.85	+0.1
1,128,120	-		Sama_0933	0.85	+2.0
1,128,120	-		Sama_0933	0.85	-0.4
1,128,123	+		Sama_0933	0.85	-0.8
1,128,129	+		Sama_0933	0.87	-0.6
1,128,130	-		Sama_0933	0.87	+1.0
1,128,130	-		Sama_0933	0.87	-1.4
1,128,166	-				-0.4
1,128,170	+				+1.8
1,128,171	-				-0.9
1,128,189	-				-0.2
1,128,196	+				-1.2
1,128,199	-				-0.5
1,128,199	-				+0.2
1,128,212	+				-0.4
1,128,212	+				-0.2
1,128,227	+				-0.4
1,128,253	-				+0.3
1,128,291	+				+1.8
1,128,292	-				-0.2
1,128,296	+				-1.0
1,128,297	-				+1.1
1,128,301	+				-0.5
1,128,301	+				-0.8
1,128,301	+				+1.1
1,128,301	+				-0.7
1,128,302	-				-0.8
1,128,302	-				-0.3
1,128,302	-				-1.8
1,128,351	+				-1.0
1,128,351	+				+0.2
1,128,351	+				+0.1
1,128,352	-				+1.2
1,128,368	+		Sama_0934	0.11	+0.1
1,128,372	+		Sama_0934	0.12	+0.8
1,128,372	+		Sama_0934	0.12	+3.8
1,128,372	+		Sama_0934	0.12	+1.7
1,128,416	-		Sama_0934	0.20	-0.9
1,128,481	+		Sama_0934	0.33	+1.2
1,128,481	+		Sama_0934	0.33	+0.8
1,128,481	+		Sama_0934	0.33	+0.3
1,128,482	-		Sama_0934	0.33	+0.2
1,128,482	-		Sama_0934	0.33	+0.2
1,128,482	-		Sama_0934	0.33	-1.8
1,128,488	+		Sama_0934	0.34	-2.3
1,128,488	+		Sama_0934	0.34	+0.9
1,128,488	+		Sama_0934	0.34	-0.5
1,128,488	+		Sama_0934	0.34	+1.8
1,128,525	+		Sama_0934	0.42	+0.4
1,128,526	-		Sama_0934	0.42	-0.8
1,128,526	-		Sama_0934	0.42	+0.2
1,128,529	-		Sama_0934	0.42	+0.5
1,128,529	-		Sama_0934	0.42	+1.1
1,128,529	-		Sama_0934	0.42	-0.5
1,128,529	-		Sama_0934	0.42	+0.8
1,128,529	-		Sama_0934	0.42	+1.2
1,128,543	+		Sama_0934	0.45	+0.8
1,128,551	+		Sama_0934	0.47	+0.0
1,128,573	+		Sama_0934	0.51	+0.1
1,128,573	+		Sama_0934	0.51	+1.2
1,128,574	-		Sama_0934	0.51	+0.8
1,128,627	+		Sama_0934	0.61	+0.5
1,128,627	+		Sama_0934	0.61	+0.2
1,128,627	+		Sama_0934	0.61	-1.5
1,128,627	+		Sama_0934	0.61	+0.0
1,128,627	+		Sama_0934	0.61	+0.1
1,128,660	-		Sama_0934	0.68	+0.2
1,128,696	+		Sama_0934	0.75	-1.6
1,128,716	+		Sama_0934	0.79	-1.2
1,128,716	+		Sama_0934	0.79	+1.3
1,128,716	+		Sama_0934	0.79	+0.0
1,128,726	+		Sama_0934	0.81	-0.2
1,128,726	+		Sama_0934	0.81	+0.9
1,128,726	+		Sama_0934	0.81	+0.0
1,128,727	-		Sama_0934	0.81	+0.1
1,128,735	-		Sama_0934	0.82	+2.1
1,128,762	+		Sama_0934	0.88	-0.9
1,128,762	+		Sama_0934	0.88	-0.1
1,128,762	+		Sama_0934	0.88	+1.4
1,128,763	-		Sama_0934	0.88	+0.2
1,128,763	-		Sama_0934	0.88	+0.8
1,128,763	-		Sama_0934	0.88	+0.6
1,128,789	+				+0.3
1,128,795	+				+0.7
1,128,796	-				+0.2
1,128,796	-				+1.8
1,128,803	+				-0.2
1,128,803	+				+1.2
1,128,803	+				-1.2
1,128,824	+				-0.5
1,128,840	+				+0.0
1,128,840	+				-0.8
1,128,840	+				+0.2
1,128,841	-				-1.0
1,128,841	-				+1.1
1,128,841	-				+0.1
1,128,841	-				-0.2
1,128,897	+				-0.2
1,128,898	-				-1.8
1,128,898	-				-0.6
1,128,899	+				-0.0
1,128,900	-				+0.7
1,128,900	-				+1.8
1,128,930	+				+0.4
1,128,930	+				+0.0
1,128,931	-				-0.4
1,128,932	+				-0.5
1,128,932	+				+0.9
1,128,932	+				-0.4
1,128,933	-				+0.8
1,128,933	-				+0.5
1,128,934	+				+0.2
1,128,934	+				+0.0
1,128,934	+				+0.0
1,128,934	+				+1.1
1,128,935	-				-0.2
1,128,935	-				+0.8
1,128,947	+				+0.5
1,128,953	+				+0.8
1,128,953	+				-0.6
1,128,966	+				-1.3
1,128,984	+				-3.4
1,128,998	+				+1.2
1,128,998	+				+1.8
1,128,999	-				+1.5
1,128,999	-				+0.1
1,129,002	-				+0.0
1,129,006	-				+0.3
1,129,006	-				+0.2
1,129,031	+				-1.5
1,129,177	+		Sama_0935	0.39	+0.4
1,129,177	+		Sama_0935	0.39	+0.2
1,129,179	+		Sama_0935	0.40	-0.3
1,129,194	+		Sama_0935	0.44	+0.8
1,129,194	+		Sama_0935	0.44	+0.1
1,129,194	+		Sama_0935	0.44	-0.8
1,129,194	+		Sama_0935	0.44	+1.5
1,129,194	+		Sama_0935	0.44	+0.4
1,129,194	+		Sama_0935	0.44	-0.4
1,129,194	+		Sama_0935	0.44	-0.3
1,129,194	+		Sama_0935	0.44	+0.2
1,129,195	-		Sama_0935	0.45	-0.8
1,129,195	-		Sama_0935	0.45	+1.4
1,129,196	+		Sama_0935	0.45	-0.2
1,129,196	+		Sama_0935	0.45	+0.6
1,129,196	+		Sama_0935	0.45	-0.8
1,129,196	+		Sama_0935	0.45	+1.0
1,129,196	+		Sama_0935	0.45	+0.3
1,129,197	-		Sama_0935	0.45	+1.5
1,129,236	-		Sama_0935	0.57	-0.7
1,129,253	-		Sama_0935	0.62	-1.2
1,129,273	+		Sama_0935	0.68	-0.2
1,129,274	-		Sama_0935	0.68	+1.1
1,129,274	-		Sama_0935	0.68	+0.8
1,129,520	+				+0.0
1,129,521	-				+0.0
1,129,521	-				+0.8
1,129,552	+				-0.5
1,129,552	+				-1.8
1,129,552	+				+1.0
1,129,553	-				-0.4
1,129,585	+				+0.4
1,129,585	+				-0.6
1,129,588	+				-0.1
1,129,588	+				-0.5
1,129,588	+				-0.9
1,129,595	+				-0.6
1,129,595	+				-0.8
1,129,596	-				+0.4
1,129,596	-				+2.4
1,129,597	+				+0.0
1,129,597	+				-0.6
1,129,597	+				+0.5
1,129,597	+				+0.5
1,129,597	+				-0.6
1,129,597	+				-0.2
1,129,597	+				+0.2
1,129,597	+				+0.1
1,129,598	-				+0.8
1,129,598	-				-0.9
1,129,598	-				-0.7
1,129,598	-				-1.0
1,129,598	-				-0.6
1,129,598	-				-1.2
1,129,598	-				-2.0
1,129,598	-				-0.3
1,129,598	-				-1.0
1,129,618	+				-1.0
1,129,618	+				-0.5
1,129,619	-				-1.0
1,129,624	+				-1.2
1,129,624	+				+1.2
1,129,624	+				-0.4
1,129,624	+				+0.5
1,129,624	+				-1.2
1,129,625	-				-0.3
1,129,625	-				-1.1
1,129,625	-				-0.2
1,129,625	-				+0.1
1,129,625	-				-1.0
1,129,625	-				-0.3
1,129,625	-				-1.9
1,129,711	+				-1.1
1,129,711	+				+0.8
1,129,712	-				-1.8
1,129,715	+				-0.6
1,129,715	+				+0.5
1,129,715	+				-0.3
1,129,715	+				-1.5
1,129,715	+				+1.2
1,129,716	-				+0.2
1,129,716	-				-1.6
1,129,730	+				-0.4
1,129,742	+		Sama_0936	0.11	-0.8
1,129,742	+		Sama_0936	0.11	-0.1
1,129,742	+		Sama_0936	0.11	+0.4
1,129,742	+		Sama_0936	0.11	-1.4
1,129,757	-		Sama_0936	0.12	-0.2
1,129,757	-		Sama_0936	0.12	+0.5
1,129,757	-		Sama_0936	0.12	+0.0
1,129,771	+		Sama_0936	0.13	+0.4
1,129,771	+		Sama_0936	0.13	-0.8
1,129,772	-		Sama_0936	0.13	+0.7
1,129,772	-		Sama_0936	0.13	-0.2
1,129,893	+		Sama_0936	0.23	-0.8
1,129,933	+		Sama_0936	0.26	-0.9
1,129,933	+		Sama_0936	0.26	-0.2
1,129,934	-		Sama_0936	0.26	+0.5
1,129,934	-		Sama_0936	0.26	-0.8
1,129,938	+		Sama_0936	0.26	-0.9
1,129,938	+		Sama_0936	0.26	+0.1
1,129,938	+		Sama_0936	0.26	+0.2
1,129,938	+		Sama_0936	0.26	-1.0
1,129,938	+		Sama_0936	0.26	-0.4
1,129,938	+		Sama_0936	0.26	-0.8
1,129,938	+		Sama_0936	0.26	-1.6
1,129,938	+		Sama_0936	0.26	-1.7
1,129,938	+		Sama_0936	0.26	-1.7
1,129,938	+		Sama_0936	0.26	-0.6
1,129,939	-		Sama_0936	0.26	-1.0
1,129,939	-		Sama_0936	0.26	-0.8
1,129,939	-		Sama_0936	0.26	+1.5
1,129,939	-		Sama_0936	0.26	+0.8
1,129,939	-		Sama_0936	0.26	-0.1
1,129,939	-		Sama_0936	0.26	+0.5
1,129,939	-		Sama_0936	0.26	-0.8
1,129,945	-		Sama_0936	0.27	+0.1
1,130,010	-		Sama_0936	0.32	-2.3
1,130,010	-		Sama_0936	0.32	-1.8
1,130,109	-		Sama_0936	0.39	-0.1
1,130,216	+		Sama_0936	0.48	-1.5
1,130,217	-		Sama_0936	0.48	-0.1
1,130,217	-		Sama_0936	0.48	+0.8
1,130,218	+		Sama_0936	0.48	-1.5
1,130,218	+		Sama_0936	0.48	-1.9
1,130,218	+		Sama_0936	0.48	-0.6
1,130,218	+		Sama_0936	0.48	+0.4
1,130,218	+		Sama_0936	0.48	+0.5
1,130,218	+		Sama_0936	0.48	-0.4
1,130,218	+		Sama_0936	0.48	-1.0
1,130,218	+		Sama_0936	0.48	-1.5
1,130,218	+		Sama_0936	0.48	-0.2
1,130,218	+		Sama_0936	0.48	-0.8
1,130,218	+		Sama_0936	0.48	+0.8
1,130,218	+		Sama_0936	0.48	-2.0
1,130,218	+		Sama_0936	0.48	-1.8
1,130,218	+		Sama_0936	0.48	+0.8
1,130,218	+		Sama_0936	0.48	+0.1
1,130,218	+		Sama_0936	0.48	-0.6
1,130,219	-		Sama_0936	0.48	-0.2
1,130,219	-		Sama_0936	0.48	-0.2
1,130,219	-		Sama_0936	0.48	+1.4
1,130,219	-		Sama_0936	0.48	-2.4
1,130,219	-		Sama_0936	0.48	+0.8
1,130,219	-		Sama_0936	0.48	-0.2
1,130,219	-		Sama_0936	0.48	-2.4
1,130,219	-		Sama_0936	0.48	-0.8
1,130,219	-		Sama_0936	0.48	+0.4
1,130,219	-		Sama_0936	0.48	-1.0
1,130,219	-		Sama_0936	0.48	-0.6
1,130,219	-		Sama_0936	0.48	-1.4
1,130,219	-		Sama_0936	0.48	-1.8
1,130,225	+		Sama_0936	0.48	-0.7
1,130,226	-		Sama_0936	0.48	-0.6
1,130,303	-		Sama_0936	0.54	-0.8
1,130,303	-		Sama_0936	0.54	+1.4
1,130,314	+		Sama_0936	0.55	+0.4
1,130,314	+		Sama_0936	0.55	-0.1
1,130,314	+		Sama_0936	0.55	+0.2
1,130,314	+		Sama_0936	0.55	+0.2
1,130,315	-		Sama_0936	0.55	-0.2
1,130,315	-		Sama_0936	0.55	-0.2
1,130,315	-		Sama_0936	0.55	-0.5
1,130,315	-		Sama_0936	0.55	-0.5
1,130,357	+		Sama_0936	0.59	+1.3
1,130,357	+		Sama_0936	0.59	-1.8
1,130,357	+		Sama_0936	0.59	+0.8
1,130,357	+		Sama_0936	0.59	-1.4
1,130,378	+		Sama_0936	0.60	-0.6