Strain Fitness in Shewanella amazonensis SB2B around Sama_1789

Experiment: Choline chloride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 200 mM
2,180,660	-				-0.1
2,180,660	-				-0.9
2,180,663	+				-0.9
2,180,665	+				-0.1
2,180,666	-				+0.0
2,180,666	-				-0.1
2,180,673	+				+0.1
2,180,686	-				+1.5
2,180,736	+				-0.3
2,180,788	+				-1.5
2,180,789	-				+0.5
2,180,807	+				+0.5
2,180,807	+				-0.5
2,180,808	-				+0.1
2,180,810	+				+0.5
2,180,831	+				-0.1
2,180,832	-				-0.1
2,180,834	-				+0.5
2,180,852	+				+1.4
2,180,853	-				+1.1
2,180,883	+				+0.5
2,180,990	+				+0.9
2,180,991	-				+0.5
2,180,995	-				-0.5
2,181,005	+				-0.2
2,181,028	-				-0.5
2,181,042	+				+1.1
2,181,085	+				+2.1
2,181,155	+				-0.5
2,181,202	-		Sama_1788	0.17	-0.5
2,181,248	+		Sama_1788	0.31	-0.3
2,181,249	-		Sama_1788	0.31	+0.5
2,181,321	-		Sama_1788	0.53	-1.1
2,181,327	+		Sama_1788	0.55	-1.9
2,181,338	+		Sama_1788	0.58	-1.1
2,181,396	+		Sama_1788	0.75	-1.1
2,181,397	-		Sama_1788	0.76	-0.2
2,181,469	+				-0.5
2,181,469	+				+0.1
2,181,470	-				+0.1
2,181,494	-				-0.4
2,181,494	-				-1.5
2,181,527	-				+1.7
2,181,567	-				-0.5
2,181,567	-				+0.6
2,181,567	-				-0.9
2,181,585	-				+0.7
2,181,884	+		Sama_1789	0.16	-1.9
2,181,884	+		Sama_1789	0.16	-1.5
2,181,885	-		Sama_1789	0.16	+0.1
2,181,885	-		Sama_1789	0.16	-1.5
2,181,921	-		Sama_1789	0.18	-0.9
2,181,942	+		Sama_1789	0.20	-0.5
2,181,943	-		Sama_1789	0.20	-0.3
2,181,962	+		Sama_1789	0.21	+0.1
2,181,963	-		Sama_1789	0.21	-0.5
2,181,963	-		Sama_1789	0.21	+0.8
2,181,963	-		Sama_1789	0.21	+0.2
2,181,965	+		Sama_1789	0.21	-0.1
2,181,966	-		Sama_1789	0.21	+1.2
2,181,966	-		Sama_1789	0.21	+0.1
2,181,966	-		Sama_1789	0.21	+2.5
2,181,966	-		Sama_1789	0.21	-1.5
2,182,018	+		Sama_1789	0.24	-0.1
2,182,034	-		Sama_1789	0.25	-1.1
2,182,081	+		Sama_1789	0.28	-0.5
2,182,082	-		Sama_1789	0.28	-0.3
2,182,082	-		Sama_1789	0.28	-0.7
2,182,110	+		Sama_1789	0.30	+0.5
2,182,110	+		Sama_1789	0.30	-1.3
2,182,152	+		Sama_1789	0.33	+0.1
2,182,209	-		Sama_1789	0.37	-0.3
2,182,209	-		Sama_1789	0.37	-1.1
2,182,287	+		Sama_1789	0.41	+0.1
2,182,393	-		Sama_1789	0.48	-1.1
2,182,403	+		Sama_1789	0.49	-1.1
2,182,439	-		Sama_1789	0.51	+0.5
2,182,498	+		Sama_1789	0.55	+0.8
2,182,498	+		Sama_1789	0.55	-0.1
2,182,498	+		Sama_1789	0.55	-0.8
2,182,498	+		Sama_1789	0.55	-1.4
2,182,499	-		Sama_1789	0.55	+1.7
2,182,499	-		Sama_1789	0.55	-0.8
2,182,499	-		Sama_1789	0.55	-0.6
2,182,499	-		Sama_1789	0.55	-0.5
2,182,500	+		Sama_1789	0.55	-0.5
2,182,520	+		Sama_1789	0.56	-0.8
2,182,520	+		Sama_1789	0.56	-0.2
2,182,520	+		Sama_1789	0.56	-0.1
2,182,521	-		Sama_1789	0.56	+0.9
2,182,547	+		Sama_1789	0.58	-0.3
2,182,586	+		Sama_1789	0.60	-0.4
2,182,586	+		Sama_1789	0.60	+1.5
2,182,586	+		Sama_1789	0.60	-1.3
2,182,604	+		Sama_1789	0.62	-0.3
2,182,604	+		Sama_1789	0.62	-0.9
2,182,605	-		Sama_1789	0.62	-0.9
2,182,631	+		Sama_1789	0.63	-0.5
2,182,631	+		Sama_1789	0.63	+0.5
2,182,650	-		Sama_1789	0.65	+0.5
2,182,748	-		Sama_1789	0.71	-0.1
2,182,751	+		Sama_1789	0.71	-0.5
2,182,779	+		Sama_1789	0.73	+0.5
2,182,790	+		Sama_1789	0.73	+0.1
2,182,791	-		Sama_1789	0.73	-0.1
2,182,993	-		Sama_1789	0.86	-2.1
2,182,998	+		Sama_1789	0.87	-0.5
2,183,002	+		Sama_1789	0.87	+1.3
2,183,012	+		Sama_1789	0.87	-0.5
2,183,012	+		Sama_1789	0.87	+0.5
2,183,013	-		Sama_1789	0.88	+0.8
2,183,013	-		Sama_1789	0.88	+0.2
2,183,013	-		Sama_1789	0.88	+0.5
2,183,133	-				-0.4
2,183,133	-				+0.1
2,183,276	+		Sama_1790	0.14	+0.5
2,183,277	-		Sama_1790	0.15	-0.5
2,183,277	-		Sama_1790	0.15	-2.9
2,183,277	-		Sama_1790	0.15	-1.1
2,183,297	+		Sama_1790	0.19	-1.1
2,183,297	+		Sama_1790	0.19	-0.1
2,183,297	+		Sama_1790	0.19	-1.9
2,183,298	-		Sama_1790	0.19	-0.8
2,183,298	-		Sama_1790	0.19	-1.9
2,183,298	-		Sama_1790	0.19	-0.4
2,183,298	-		Sama_1790	0.19	+0.2
2,183,298	-		Sama_1790	0.19	-1.5
2,183,298	-		Sama_1790	0.19	-1.4
2,183,299	+		Sama_1790	0.19	-2.3
2,183,299	+		Sama_1790	0.19	-1.0
2,183,299	+		Sama_1790	0.19	-0.3
2,183,300	-		Sama_1790	0.20	-0.4
2,183,300	-		Sama_1790	0.20	-0.5
2,183,300	-		Sama_1790	0.20	-1.9
2,183,300	-		Sama_1790	0.20	-2.3
2,183,442	+		Sama_1790	0.51	-2.0
2,183,443	-		Sama_1790	0.51	-0.9
2,183,494	-		Sama_1790	0.62	-2.5
2,183,658	+				+0.5
2,183,666	+				-0.3
2,183,667	-				-0.6
2,183,677	-				-1.1
2,183,744	+				+0.8
2,183,768	-				-1.2
2,183,896	+				-0.7
2,183,896	+				-1.3
2,183,896	+				-1.3
2,183,896	+				-2.1
2,183,897	-				-0.7
2,183,897	-				+0.1
2,183,897	-				-1.6
2,183,908	+				-0.9
2,183,911	+				-0.3
2,183,912	-				-2.4
2,183,912	-				-1.9
2,183,927	+				-1.4
2,183,927	+				-1.5
2,183,927	+				-2.5
2,183,928	-				-1.2
2,183,928	-				-0.8
2,183,961	+				-0.5
2,183,961	+				-2.5
2,183,962	-				-2.2
2,183,967	+				-0.5
2,183,967	+				-2.1
2,183,967	+				-0.1
2,184,021	-				-0.2
2,184,052	+				-0.8
2,184,168	+		Sama_1791	0.17	-1.2
2,184,168	+		Sama_1791	0.17	-0.3
2,184,168	+		Sama_1791	0.17	-0.9
2,184,169	-		Sama_1791	0.17	-1.1
2,184,169	-		Sama_1791	0.17	-0.8
2,184,169	-		Sama_1791	0.17	-0.9
2,184,169	-		Sama_1791	0.17	-1.6
2,184,171	+		Sama_1791	0.17	-2.3
2,184,171	+		Sama_1791	0.17	-0.8
2,184,171	+		Sama_1791	0.17	-0.5
2,184,172	-		Sama_1791	0.17	-1.3
2,184,172	-		Sama_1791	0.17	+0.5
2,184,172	-		Sama_1791	0.17	-1.3
2,184,172	-		Sama_1791	0.17	+0.2
2,184,185	+		Sama_1791	0.18	-1.9
2,184,186	-		Sama_1791	0.18	+0.7
2,184,186	-		Sama_1791	0.18	-2.3
2,184,186	-		Sama_1791	0.18	-2.1