Strain Fitness in Shewanella amazonensis SB2B around Sama_3452

Experiment: Choline chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_3451 and Sama_3452 are separated by 12 nucleotidesSama_3452 and Sama_3453 are separated by 230 nucleotidesSama_3453 and Sama_3454 are separated by 25 nucleotides Sama_3451: Sama_3451 - hypothetical protein (RefSeq), at 4,081,288 to 4,082,715 _3451 Sama_3452: Sama_3452 - hypothetical protein (RefSeq), at 4,082,728 to 4,083,429 _3452 Sama_3453: Sama_3453 - hypothetical protein (RefSeq), at 4,083,660 to 4,084,202 _3453 Sama_3454: Sama_3454 - hypothetical protein (RefSeq), at 4,084,228 to 4,084,665 _3454 Position (kb) 4082 4083 4084Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4081.769 kb on + strand, within Sama_3451at 4081.769 kb on + strand, within Sama_3451at 4081.770 kb on - strand, within Sama_3451at 4081.770 kb on - strand, within Sama_3451at 4081.809 kb on + strand, within Sama_3451at 4081.809 kb on + strand, within Sama_3451at 4081.818 kb on - strand, within Sama_3451at 4081.818 kb on - strand, within Sama_3451at 4081.818 kb on - strand, within Sama_3451at 4081.845 kb on - strand, within Sama_3451at 4081.853 kb on - strand, within Sama_3451at 4081.864 kb on - strand, within Sama_3451at 4081.864 kb on - strand, within Sama_3451at 4081.939 kb on - strand, within Sama_3451at 4081.962 kb on - strand, within Sama_3451at 4081.962 kb on - strand, within Sama_3451at 4082.022 kb on + strand, within Sama_3451at 4082.022 kb on + strand, within Sama_3451at 4082.022 kb on + strand, within Sama_3451at 4082.022 kb on + strand, within Sama_3451at 4082.023 kb on - strand, within Sama_3451at 4082.051 kb on + strand, within Sama_3451at 4082.052 kb on - strand, within Sama_3451at 4082.052 kb on - strand, within Sama_3451at 4082.052 kb on - strand, within Sama_3451at 4082.052 kb on - strand, within Sama_3451at 4082.052 kb on - strand, within Sama_3451at 4082.052 kb on - strand, within Sama_3451at 4082.052 kb on - strand, within Sama_3451at 4082.082 kb on - strand, within Sama_3451at 4082.123 kb on + strand, within Sama_3451at 4082.124 kb on - strand, within Sama_3451at 4082.208 kb on + strand, within Sama_3451at 4082.209 kb on - strand, within Sama_3451at 4082.209 kb on - strand, within Sama_3451at 4082.228 kb on + strand, within Sama_3451at 4082.228 kb on + strand, within Sama_3451at 4082.228 kb on + strand, within Sama_3451at 4082.228 kb on + strand, within Sama_3451at 4082.228 kb on + strand, within Sama_3451at 4082.228 kb on + strand, within Sama_3451at 4082.228 kb on + strand, within Sama_3451at 4082.229 kb on - strand, within Sama_3451at 4082.229 kb on - strand, within Sama_3451at 4082.229 kb on - strand, within Sama_3451at 4082.229 kb on - strand, within Sama_3451at 4082.264 kb on + strand, within Sama_3451at 4082.264 kb on + strand, within Sama_3451at 4082.265 kb on - strand, within Sama_3451at 4082.265 kb on - strand, within Sama_3451at 4082.319 kb on + strand, within Sama_3451at 4082.414 kb on + strand, within Sama_3451at 4082.479 kb on + strand, within Sama_3451at 4082.479 kb on + strand, within Sama_3451at 4082.522 kb on + strand, within Sama_3451at 4082.522 kb on + strand, within Sama_3451at 4082.565 kb on + strand, within Sama_3451at 4082.565 kb on + strand, within Sama_3451at 4082.566 kb on - strand, within Sama_3451at 4082.566 kb on - strand, within Sama_3451at 4082.579 kb on + strandat 4082.580 kb on - strandat 4082.580 kb on - strandat 4082.648 kb on + strandat 4082.692 kb on - strandat 4082.722 kb on + strandat 4082.730 kb on - strandat 4082.730 kb on - strandat 4082.730 kb on - strandat 4082.753 kb on + strandat 4082.753 kb on + strandat 4082.753 kb on + strandat 4082.753 kb on + strandat 4082.754 kb on - strandat 4082.754 kb on - strandat 4082.754 kb on - strandat 4082.754 kb on - strandat 4082.754 kb on - strandat 4082.754 kb on - strandat 4082.790 kb on + strandat 4082.885 kb on + strand, within Sama_3452at 4082.885 kb on + strand, within Sama_3452at 4082.885 kb on + strand, within Sama_3452at 4082.885 kb on + strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.886 kb on - strand, within Sama_3452at 4082.910 kb on + strand, within Sama_3452at 4082.911 kb on - strand, within Sama_3452at 4082.914 kb on + strand, within Sama_3452at 4082.915 kb on - strand, within Sama_3452at 4082.985 kb on + strand, within Sama_3452at 4082.986 kb on - strand, within Sama_3452at 4082.986 kb on - strand, within Sama_3452at 4082.997 kb on - strand, within Sama_3452at 4082.997 kb on - strand, within Sama_3452at 4082.997 kb on - strand, within Sama_3452at 4083.069 kb on + strand, within Sama_3452at 4083.070 kb on - strand, within Sama_3452at 4083.070 kb on - strand, within Sama_3452at 4083.074 kb on - strand, within Sama_3452at 4083.197 kb on + strand, within Sama_3452at 4083.197 kb on + strand, within Sama_3452at 4083.197 kb on + strand, within Sama_3452at 4083.198 kb on - strand, within Sama_3452at 4083.283 kb on - strand, within Sama_3452at 4083.283 kb on - strand, within Sama_3452at 4083.396 kb on + strandat 4083.397 kb on - strandat 4083.397 kb on - strandat 4083.398 kb on + strandat 4083.398 kb on + strandat 4083.399 kb on - strandat 4083.399 kb on - strandat 4083.412 kb on + strandat 4083.412 kb on + strandat 4083.412 kb on + strandat 4083.414 kb on + strandat 4083.414 kb on + strandat 4083.414 kb on + strandat 4083.415 kb on - strandat 4083.415 kb on - strandat 4083.429 kb on + strandat 4083.429 kb on + strandat 4083.429 kb on + strandat 4083.429 kb on + strandat 4083.429 kb on + strandat 4083.429 kb on + strandat 4083.429 kb on + strandat 4083.429 kb on + strandat 4083.429 kb on + strandat 4083.430 kb on - strandat 4083.430 kb on - strandat 4083.430 kb on - strandat 4083.430 kb on - strandat 4083.430 kb on - strandat 4083.430 kb on - strandat 4083.430 kb on - strandat 4083.430 kb on - strandat 4083.447 kb on + strandat 4083.454 kb on - strandat 4083.454 kb on - strandat 4083.454 kb on - strandat 4083.505 kb on - strandat 4083.510 kb on - strandat 4083.517 kb on + strandat 4083.517 kb on + strandat 4083.517 kb on + strandat 4083.518 kb on - strandat 4083.518 kb on - strandat 4083.553 kb on + strandat 4083.553 kb on + strandat 4083.553 kb on + strandat 4083.553 kb on + strandat 4083.553 kb on + strandat 4083.554 kb on - strandat 4083.554 kb on - strandat 4083.561 kb on + strandat 4083.561 kb on + strandat 4083.573 kb on + strandat 4083.573 kb on + strandat 4083.573 kb on + strandat 4083.573 kb on + strandat 4083.573 kb on + strandat 4083.573 kb on + strandat 4083.574 kb on - strandat 4083.574 kb on - strandat 4083.574 kb on - strandat 4083.574 kb on - strandat 4083.574 kb on - strandat 4083.574 kb on - strandat 4083.574 kb on - strandat 4083.574 kb on - strandat 4083.574 kb on - strandat 4083.574 kb on - strandat 4083.612 kb on + strandat 4083.612 kb on + strandat 4083.613 kb on - strandat 4083.613 kb on - strandat 4083.613 kb on - strandat 4083.617 kb on + strandat 4083.618 kb on - strandat 4083.645 kb on - strandat 4083.645 kb on - strandat 4083.758 kb on + strand, within Sama_3453at 4083.758 kb on + strand, within Sama_3453at 4083.758 kb on + strand, within Sama_3453at 4083.759 kb on - strand, within Sama_3453at 4083.759 kb on - strand, within Sama_3453at 4083.770 kb on + strand, within Sama_3453at 4083.771 kb on - strand, within Sama_3453at 4083.800 kb on + strand, within Sama_3453at 4083.801 kb on - strand, within Sama_3453at 4083.823 kb on + strand, within Sama_3453at 4083.823 kb on + strand, within Sama_3453at 4083.823 kb on + strand, within Sama_3453at 4083.823 kb on + strand, within Sama_3453at 4083.850 kb on + strand, within Sama_3453at 4083.890 kb on + strand, within Sama_3453at 4083.890 kb on + strand, within Sama_3453at 4083.890 kb on + strand, within Sama_3453at 4084.001 kb on + strand, within Sama_3453at 4084.001 kb on + strand, within Sama_3453at 4084.001 kb on + strand, within Sama_3453at 4084.001 kb on + strand, within Sama_3453at 4084.001 kb on + strand, within Sama_3453at 4084.002 kb on - strand, within Sama_3453at 4084.002 kb on - strand, within Sama_3453at 4084.002 kb on - strand, within Sama_3453at 4084.065 kb on + strand, within Sama_3453at 4084.066 kb on - strand, within Sama_3453at 4084.066 kb on - strand, within Sama_3453at 4084.066 kb on - strand, within Sama_3453at 4084.088 kb on + strand, within Sama_3453at 4084.088 kb on + strand, within Sama_3453at 4084.088 kb on + strand, within Sama_3453at 4084.135 kb on - strand, within Sama_3453at 4084.135 kb on - strand, within Sama_3453at 4084.160 kb on + strandat 4084.160 kb on + strandat 4084.160 kb on + strandat 4084.160 kb on + strandat 4084.161 kb on - strandat 4084.171 kb on + strandat 4084.172 kb on - strandat 4084.200 kb on + strandat 4084.200 kb on + strandat 4084.200 kb on + strandat 4084.201 kb on - strandat 4084.201 kb on - strandat 4084.201 kb on - strandat 4084.208 kb on - strandat 4084.208 kb on - strandat 4084.208 kb on - strandat 4084.208 kb on - strandat 4084.233 kb on + strandat 4084.233 kb on + strandat 4084.233 kb on + strandat 4084.233 kb on + strandat 4084.233 kb on + strandat 4084.233 kb on + strandat 4084.233 kb on + strandat 4084.234 kb on - strandat 4084.234 kb on - strandat 4084.234 kb on - strandat 4084.234 kb on - strandat 4084.393 kb on - strand, within Sama_3454at 4084.400 kb on + strand, within Sama_3454at 4084.401 kb on - strand, within Sama_3454

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 200 mM
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4,081,769 + Sama_3451 0.34 +0.4
4,081,769 + Sama_3451 0.34 -0.2
4,081,770 - Sama_3451 0.34 -1.0
4,081,770 - Sama_3451 0.34 +0.5
4,081,809 + Sama_3451 0.36 -0.5
4,081,809 + Sama_3451 0.36 -0.1
4,081,818 - Sama_3451 0.37 -0.7
4,081,818 - Sama_3451 0.37 -0.9
4,081,818 - Sama_3451 0.37 -0.5
4,081,845 - Sama_3451 0.39 +0.0
4,081,853 - Sama_3451 0.40 +0.6
4,081,864 - Sama_3451 0.40 -0.7
4,081,864 - Sama_3451 0.40 -2.5
4,081,939 - Sama_3451 0.46 -0.1
4,081,962 - Sama_3451 0.47 +0.2
4,081,962 - Sama_3451 0.47 -1.8
4,082,022 + Sama_3451 0.51 -0.7
4,082,022 + Sama_3451 0.51 +0.2
4,082,022 + Sama_3451 0.51 +0.5
4,082,022 + Sama_3451 0.51 +0.9
4,082,023 - Sama_3451 0.51 -1.0
4,082,051 + Sama_3451 0.53 +0.2
4,082,052 - Sama_3451 0.54 -0.0
4,082,052 - Sama_3451 0.54 -1.0
4,082,052 - Sama_3451 0.54 -1.0
4,082,052 - Sama_3451 0.54 -0.4
4,082,052 - Sama_3451 0.54 -0.4
4,082,052 - Sama_3451 0.54 -0.8
4,082,052 - Sama_3451 0.54 +0.5
4,082,082 - Sama_3451 0.56 -3.0
4,082,123 + Sama_3451 0.58 -0.7
4,082,124 - Sama_3451 0.59 +0.2
4,082,208 + Sama_3451 0.64 -0.6
4,082,209 - Sama_3451 0.64 -1.7
4,082,209 - Sama_3451 0.64 -0.4
4,082,228 + Sama_3451 0.66 -1.6
4,082,228 + Sama_3451 0.66 +0.3
4,082,228 + Sama_3451 0.66 -0.5
4,082,228 + Sama_3451 0.66 -0.1
4,082,228 + Sama_3451 0.66 -2.5
4,082,228 + Sama_3451 0.66 -0.0
4,082,228 + Sama_3451 0.66 -0.9
4,082,229 - Sama_3451 0.66 -0.3
4,082,229 - Sama_3451 0.66 -1.1
4,082,229 - Sama_3451 0.66 -0.6
4,082,229 - Sama_3451 0.66 +0.7
4,082,264 + Sama_3451 0.68 +0.7
4,082,264 + Sama_3451 0.68 -1.8
4,082,265 - Sama_3451 0.68 -0.1
4,082,265 - Sama_3451 0.68 -0.4
4,082,319 + Sama_3451 0.72 -0.1
4,082,414 + Sama_3451 0.79 -1.1
4,082,479 + Sama_3451 0.83 -0.4
4,082,479 + Sama_3451 0.83 -0.6
4,082,522 + Sama_3451 0.86 +0.4
4,082,522 + Sama_3451 0.86 +0.4
4,082,565 + Sama_3451 0.89 -1.4
4,082,565 + Sama_3451 0.89 -0.9
4,082,566 - Sama_3451 0.89 +0.6
4,082,566 - Sama_3451 0.89 +0.5
4,082,579 + +0.5
4,082,580 - -1.6
4,082,580 - -0.5
4,082,648 + -0.8
4,082,692 - +0.3
4,082,722 + -0.4
4,082,730 - +0.4
4,082,730 - -0.1
4,082,730 - -1.0
4,082,753 + -0.4
4,082,753 + -1.6
4,082,753 + -1.4
4,082,753 + +0.6
4,082,754 - +0.5
4,082,754 - -0.2
4,082,754 - -1.1
4,082,754 - -0.4
4,082,754 - -0.9
4,082,754 - -0.4
4,082,790 + +1.2
4,082,885 + Sama_3452 0.22 +0.5
4,082,885 + Sama_3452 0.22 -0.8
4,082,885 + Sama_3452 0.22 -1.1
4,082,885 + Sama_3452 0.22 -1.0
4,082,886 - Sama_3452 0.23 +0.8
4,082,886 - Sama_3452 0.23 -0.3
4,082,886 - Sama_3452 0.23 -0.4
4,082,886 - Sama_3452 0.23 -1.1
4,082,886 - Sama_3452 0.23 -0.8
4,082,886 - Sama_3452 0.23 -1.3
4,082,886 - Sama_3452 0.23 -1.1
4,082,886 - Sama_3452 0.23 -0.3
4,082,886 - Sama_3452 0.23 +0.1
4,082,886 - Sama_3452 0.23 -0.7
4,082,886 - Sama_3452 0.23 -0.0
4,082,910 + Sama_3452 0.26 -0.6
4,082,911 - Sama_3452 0.26 -1.9
4,082,914 + Sama_3452 0.26 -0.1
4,082,915 - Sama_3452 0.27 -1.4
4,082,985 + Sama_3452 0.37 -2.0
4,082,986 - Sama_3452 0.37 -2.1
4,082,986 - Sama_3452 0.37 +1.0
4,082,997 - Sama_3452 0.38 -1.4
4,082,997 - Sama_3452 0.38 -2.6
4,082,997 - Sama_3452 0.38 +1.8
4,083,069 + Sama_3452 0.49 -1.4
4,083,070 - Sama_3452 0.49 -2.8
4,083,070 - Sama_3452 0.49 +0.2
4,083,074 - Sama_3452 0.49 +0.0
4,083,197 + Sama_3452 0.67 -1.1
4,083,197 + Sama_3452 0.67 +0.8
4,083,197 + Sama_3452 0.67 -1.0
4,083,198 - Sama_3452 0.67 -1.0
4,083,283 - Sama_3452 0.79 +0.2
4,083,283 - Sama_3452 0.79 +0.2
4,083,396 + -1.8
4,083,397 - -1.2
4,083,397 - -0.6
4,083,398 + -2.6
4,083,398 + -0.6
4,083,399 - -2.0
4,083,399 - -1.1
4,083,412 + -0.1
4,083,412 + +2.2
4,083,412 + -0.8
4,083,414 + +1.2
4,083,414 + +0.6
4,083,414 + +0.0
4,083,415 - -2.5
4,083,415 - -0.4
4,083,429 + -0.8
4,083,429 + -1.1
4,083,429 + -0.4
4,083,429 + -0.8
4,083,429 + -1.4
4,083,429 + -0.0
4,083,429 + +0.2
4,083,429 + -0.1
4,083,429 + -1.4
4,083,430 - -1.2
4,083,430 - -2.1
4,083,430 - -1.1
4,083,430 - -1.3
4,083,430 - -1.1
4,083,430 - +0.2
4,083,430 - -0.5
4,083,430 - -0.3
4,083,447 + +0.2
4,083,454 - -1.0
4,083,454 - +0.8
4,083,454 - -0.4
4,083,505 - +0.5
4,083,510 - -0.8
4,083,517 + -0.1
4,083,517 + -0.3
4,083,517 + +0.2
4,083,518 - -0.5
4,083,518 - +1.1
4,083,553 + +0.7
4,083,553 + -1.8
4,083,553 + +0.5
4,083,553 + -0.4
4,083,553 + -0.1
4,083,554 - -0.3
4,083,554 - +0.2
4,083,561 + +0.0
4,083,561 + +1.2
4,083,573 + -0.0
4,083,573 + -0.5
4,083,573 + +1.6
4,083,573 + -1.2
4,083,573 + +0.4
4,083,573 + +0.1
4,083,574 - +0.4
4,083,574 - -0.2
4,083,574 - +0.3
4,083,574 - +0.1
4,083,574 - -0.8
4,083,574 - -0.2
4,083,574 - -0.4
4,083,574 - -0.6
4,083,574 - -0.8
4,083,574 - +1.2
4,083,612 + -0.7
4,083,612 + +0.2
4,083,613 - -0.1
4,083,613 - -0.1
4,083,613 - -1.6
4,083,617 + +0.3
4,083,618 - -0.8
4,083,645 - +0.0
4,083,645 - +0.3
4,083,758 + Sama_3453 0.18 +0.9
4,083,758 + Sama_3453 0.18 +0.1
4,083,758 + Sama_3453 0.18 +0.7
4,083,759 - Sama_3453 0.18 +1.0
4,083,759 - Sama_3453 0.18 -0.3
4,083,770 + Sama_3453 0.20 +1.1
4,083,771 - Sama_3453 0.20 -0.2
4,083,800 + Sama_3453 0.26 -0.4
4,083,801 - Sama_3453 0.26 +0.2
4,083,823 + Sama_3453 0.30 -0.9
4,083,823 + Sama_3453 0.30 -0.4
4,083,823 + Sama_3453 0.30 +0.2
4,083,823 + Sama_3453 0.30 +0.3
4,083,850 + Sama_3453 0.35 +0.3
4,083,890 + Sama_3453 0.42 -0.3
4,083,890 + Sama_3453 0.42 -0.2
4,083,890 + Sama_3453 0.42 +0.0
4,084,001 + Sama_3453 0.63 +0.0
4,084,001 + Sama_3453 0.63 +0.3
4,084,001 + Sama_3453 0.63 +0.0
4,084,001 + Sama_3453 0.63 -0.0
4,084,001 + Sama_3453 0.63 +0.1
4,084,002 - Sama_3453 0.63 -0.3
4,084,002 - Sama_3453 0.63 -0.1
4,084,002 - Sama_3453 0.63 +0.8
4,084,065 + Sama_3453 0.75 +0.6
4,084,066 - Sama_3453 0.75 +0.4
4,084,066 - Sama_3453 0.75 -0.5
4,084,066 - Sama_3453 0.75 -0.3
4,084,088 + Sama_3453 0.79 +0.1
4,084,088 + Sama_3453 0.79 +0.6
4,084,088 + Sama_3453 0.79 -0.6
4,084,135 - Sama_3453 0.87 -0.2
4,084,135 - Sama_3453 0.87 -2.0
4,084,160 + +0.3
4,084,160 + +0.7
4,084,160 + +0.6
4,084,160 + +0.1
4,084,161 - +0.2
4,084,171 + +0.6
4,084,172 - +0.1
4,084,200 + -1.5
4,084,200 + -0.2
4,084,200 + -1.0
4,084,201 - -0.4
4,084,201 - -0.8
4,084,201 - +0.3
4,084,208 - +0.1
4,084,208 - +0.2
4,084,208 - -0.5
4,084,208 - +0.0
4,084,233 + -0.6
4,084,233 + -0.1
4,084,233 + -0.1
4,084,233 + +1.0
4,084,233 + +0.2
4,084,233 + -0.3
4,084,233 + -1.4
4,084,234 - -0.8
4,084,234 - +1.2
4,084,234 - -0.4
4,084,234 - -0.1
4,084,393 - Sama_3454 0.38 +0.0
4,084,400 + Sama_3454 0.39 -2.1
4,084,401 - Sama_3454 0.39 +0.0

Or see this region's nucleotide sequence