Strain Fitness in Shewanella amazonensis SB2B around Sama_3452

Experiment: Choline chloride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 200 mM
4,081,769	+		Sama_3451	0.34	+0.4
4,081,769	+		Sama_3451	0.34	-0.2
4,081,770	-		Sama_3451	0.34	-1.0
4,081,770	-		Sama_3451	0.34	+0.5
4,081,809	+		Sama_3451	0.36	-0.5
4,081,809	+		Sama_3451	0.36	-0.1
4,081,818	-		Sama_3451	0.37	-0.7
4,081,818	-		Sama_3451	0.37	-0.9
4,081,818	-		Sama_3451	0.37	-0.5
4,081,845	-		Sama_3451	0.39	+0.0
4,081,853	-		Sama_3451	0.40	+0.6
4,081,864	-		Sama_3451	0.40	-0.7
4,081,864	-		Sama_3451	0.40	-2.5
4,081,939	-		Sama_3451	0.46	-0.1
4,081,962	-		Sama_3451	0.47	+0.2
4,081,962	-		Sama_3451	0.47	-1.8
4,082,022	+		Sama_3451	0.51	-0.7
4,082,022	+		Sama_3451	0.51	+0.2
4,082,022	+		Sama_3451	0.51	+0.5
4,082,022	+		Sama_3451	0.51	+0.9
4,082,023	-		Sama_3451	0.51	-1.0
4,082,051	+		Sama_3451	0.53	+0.2
4,082,052	-		Sama_3451	0.54	-0.0
4,082,052	-		Sama_3451	0.54	-1.0
4,082,052	-		Sama_3451	0.54	-1.0
4,082,052	-		Sama_3451	0.54	-0.4
4,082,052	-		Sama_3451	0.54	-0.4
4,082,052	-		Sama_3451	0.54	-0.8
4,082,052	-		Sama_3451	0.54	+0.5
4,082,082	-		Sama_3451	0.56	-3.0
4,082,123	+		Sama_3451	0.58	-0.7
4,082,124	-		Sama_3451	0.59	+0.2
4,082,208	+		Sama_3451	0.64	-0.6
4,082,209	-		Sama_3451	0.64	-1.7
4,082,209	-		Sama_3451	0.64	-0.4
4,082,228	+		Sama_3451	0.66	-1.6
4,082,228	+		Sama_3451	0.66	+0.3
4,082,228	+		Sama_3451	0.66	-0.5
4,082,228	+		Sama_3451	0.66	-0.1
4,082,228	+		Sama_3451	0.66	-2.5
4,082,228	+		Sama_3451	0.66	-0.0
4,082,228	+		Sama_3451	0.66	-0.9
4,082,229	-		Sama_3451	0.66	-0.3
4,082,229	-		Sama_3451	0.66	-1.1
4,082,229	-		Sama_3451	0.66	-0.6
4,082,229	-		Sama_3451	0.66	+0.7
4,082,264	+		Sama_3451	0.68	+0.7
4,082,264	+		Sama_3451	0.68	-1.8
4,082,265	-		Sama_3451	0.68	-0.1
4,082,265	-		Sama_3451	0.68	-0.4
4,082,319	+		Sama_3451	0.72	-0.1
4,082,414	+		Sama_3451	0.79	-1.1
4,082,479	+		Sama_3451	0.83	-0.4
4,082,479	+		Sama_3451	0.83	-0.6
4,082,522	+		Sama_3451	0.86	+0.4
4,082,522	+		Sama_3451	0.86	+0.4
4,082,565	+		Sama_3451	0.89	-1.4
4,082,565	+		Sama_3451	0.89	-0.9
4,082,566	-		Sama_3451	0.89	+0.6
4,082,566	-		Sama_3451	0.89	+0.5
4,082,579	+				+0.5
4,082,580	-				-1.6
4,082,580	-				-0.5
4,082,648	+				-0.8
4,082,692	-				+0.3
4,082,722	+				-0.4
4,082,730	-				+0.4
4,082,730	-				-0.1
4,082,730	-				-1.0
4,082,753	+				-0.4
4,082,753	+				-1.6
4,082,753	+				-1.4
4,082,753	+				+0.6
4,082,754	-				+0.5
4,082,754	-				-0.2
4,082,754	-				-1.1
4,082,754	-				-0.4
4,082,754	-				-0.9
4,082,754	-				-0.4
4,082,790	+				+1.2
4,082,885	+		Sama_3452	0.22	+0.5
4,082,885	+		Sama_3452	0.22	-0.8
4,082,885	+		Sama_3452	0.22	-1.1
4,082,885	+		Sama_3452	0.22	-1.0
4,082,886	-		Sama_3452	0.23	+0.8
4,082,886	-		Sama_3452	0.23	-0.3
4,082,886	-		Sama_3452	0.23	-0.4
4,082,886	-		Sama_3452	0.23	-1.1
4,082,886	-		Sama_3452	0.23	-0.8
4,082,886	-		Sama_3452	0.23	-1.3
4,082,886	-		Sama_3452	0.23	-1.1
4,082,886	-		Sama_3452	0.23	-0.3
4,082,886	-		Sama_3452	0.23	+0.1
4,082,886	-		Sama_3452	0.23	-0.7
4,082,886	-		Sama_3452	0.23	-0.0
4,082,910	+		Sama_3452	0.26	-0.6
4,082,911	-		Sama_3452	0.26	-1.9
4,082,914	+		Sama_3452	0.26	-0.1
4,082,915	-		Sama_3452	0.27	-1.4
4,082,985	+		Sama_3452	0.37	-2.0
4,082,986	-		Sama_3452	0.37	-2.1
4,082,986	-		Sama_3452	0.37	+1.0
4,082,997	-		Sama_3452	0.38	-1.4
4,082,997	-		Sama_3452	0.38	-2.6
4,082,997	-		Sama_3452	0.38	+1.8
4,083,069	+		Sama_3452	0.49	-1.4
4,083,070	-		Sama_3452	0.49	-2.8
4,083,070	-		Sama_3452	0.49	+0.2
4,083,074	-		Sama_3452	0.49	+0.0
4,083,197	+		Sama_3452	0.67	-1.1
4,083,197	+		Sama_3452	0.67	+0.8
4,083,197	+		Sama_3452	0.67	-1.0
4,083,198	-		Sama_3452	0.67	-1.0
4,083,283	-		Sama_3452	0.79	+0.2
4,083,283	-		Sama_3452	0.79	+0.2
4,083,396	+				-1.8
4,083,397	-				-1.2
4,083,397	-				-0.6
4,083,398	+				-2.6
4,083,398	+				-0.6
4,083,399	-				-2.0
4,083,399	-				-1.1
4,083,412	+				-0.1
4,083,412	+				+2.2
4,083,412	+				-0.8
4,083,414	+				+1.2
4,083,414	+				+0.6
4,083,414	+				+0.0
4,083,415	-				-2.5
4,083,415	-				-0.4
4,083,429	+				-0.8
4,083,429	+				-1.1
4,083,429	+				-0.4
4,083,429	+				-0.8
4,083,429	+				-1.4
4,083,429	+				-0.0
4,083,429	+				+0.2
4,083,429	+				-0.1
4,083,429	+				-1.4
4,083,430	-				-1.2
4,083,430	-				-2.1
4,083,430	-				-1.1
4,083,430	-				-1.3
4,083,430	-				-1.1
4,083,430	-				+0.2
4,083,430	-				-0.5
4,083,430	-				-0.3
4,083,447	+				+0.2
4,083,454	-				-1.0
4,083,454	-				+0.8
4,083,454	-				-0.4
4,083,505	-				+0.5
4,083,510	-				-0.8
4,083,517	+				-0.1
4,083,517	+				-0.3
4,083,517	+				+0.2
4,083,518	-				-0.5
4,083,518	-				+1.1
4,083,553	+				+0.7
4,083,553	+				-1.8
4,083,553	+				+0.5
4,083,553	+				-0.4
4,083,553	+				-0.1
4,083,554	-				-0.3
4,083,554	-				+0.2
4,083,561	+				+0.0
4,083,561	+				+1.2
4,083,573	+				-0.0
4,083,573	+				-0.5
4,083,573	+				+1.6
4,083,573	+				-1.2
4,083,573	+				+0.4
4,083,573	+				+0.1
4,083,574	-				+0.4
4,083,574	-				-0.2
4,083,574	-				+0.3
4,083,574	-				+0.1
4,083,574	-				-0.8
4,083,574	-				-0.2
4,083,574	-				-0.4
4,083,574	-				-0.6
4,083,574	-				-0.8
4,083,574	-				+1.2
4,083,612	+				-0.7
4,083,612	+				+0.2
4,083,613	-				-0.1
4,083,613	-				-0.1
4,083,613	-				-1.6
4,083,617	+				+0.3
4,083,618	-				-0.8
4,083,645	-				+0.0
4,083,645	-				+0.3
4,083,758	+		Sama_3453	0.18	+0.9
4,083,758	+		Sama_3453	0.18	+0.1
4,083,758	+		Sama_3453	0.18	+0.7
4,083,759	-		Sama_3453	0.18	+1.0
4,083,759	-		Sama_3453	0.18	-0.3
4,083,770	+		Sama_3453	0.20	+1.1
4,083,771	-		Sama_3453	0.20	-0.2
4,083,800	+		Sama_3453	0.26	-0.4
4,083,801	-		Sama_3453	0.26	+0.2
4,083,823	+		Sama_3453	0.30	-0.9
4,083,823	+		Sama_3453	0.30	-0.4
4,083,823	+		Sama_3453	0.30	+0.2
4,083,823	+		Sama_3453	0.30	+0.3
4,083,850	+		Sama_3453	0.35	+0.3
4,083,890	+		Sama_3453	0.42	-0.3
4,083,890	+		Sama_3453	0.42	-0.2
4,083,890	+		Sama_3453	0.42	+0.0
4,084,001	+		Sama_3453	0.63	+0.0
4,084,001	+		Sama_3453	0.63	+0.3
4,084,001	+		Sama_3453	0.63	+0.0
4,084,001	+		Sama_3453	0.63	-0.0
4,084,001	+		Sama_3453	0.63	+0.1
4,084,002	-		Sama_3453	0.63	-0.3
4,084,002	-		Sama_3453	0.63	-0.1
4,084,002	-		Sama_3453	0.63	+0.8
4,084,065	+		Sama_3453	0.75	+0.6
4,084,066	-		Sama_3453	0.75	+0.4
4,084,066	-		Sama_3453	0.75	-0.5
4,084,066	-		Sama_3453	0.75	-0.3
4,084,088	+		Sama_3453	0.79	+0.1
4,084,088	+		Sama_3453	0.79	+0.6
4,084,088	+		Sama_3453	0.79	-0.6
4,084,135	-		Sama_3453	0.87	-0.2
4,084,135	-		Sama_3453	0.87	-2.0
4,084,160	+				+0.3
4,084,160	+				+0.7
4,084,160	+				+0.6
4,084,160	+				+0.1
4,084,161	-				+0.2
4,084,171	+				+0.6
4,084,172	-				+0.1
4,084,200	+				-1.5
4,084,200	+				-0.2
4,084,200	+				-1.0
4,084,201	-				-0.4
4,084,201	-				-0.8
4,084,201	-				+0.3
4,084,208	-				+0.1
4,084,208	-				+0.2
4,084,208	-				-0.5
4,084,208	-				+0.0
4,084,233	+				-0.6
4,084,233	+				-0.1
4,084,233	+				-0.1
4,084,233	+				+1.0
4,084,233	+				+0.2
4,084,233	+				-0.3
4,084,233	+				-1.4
4,084,234	-				-0.8
4,084,234	-				+1.2
4,084,234	-				-0.4
4,084,234	-				-0.1
4,084,393	-		Sama_3454	0.38	+0.0
4,084,400	+		Sama_3454	0.39	-2.1
4,084,401	-		Sama_3454	0.39	+0.0