Experiment: Choline chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3451 and Sama_3452 are separated by 12 nucleotides Sama_3452 and Sama_3453 are separated by 230 nucleotides Sama_3453 and Sama_3454 are separated by 25 nucleotides
Sama_3451: Sama_3451 - hypothetical protein (RefSeq), at 4,081,288 to 4,082,715
_3451
Sama_3452: Sama_3452 - hypothetical protein (RefSeq), at 4,082,728 to 4,083,429
_3452
Sama_3453: Sama_3453 - hypothetical protein (RefSeq), at 4,083,660 to 4,084,202
_3453
Sama_3454: Sama_3454 - hypothetical protein (RefSeq), at 4,084,228 to 4,084,665
_3454
Position (kb)
4082
4083
4084 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4081.769 kb on + strand, within Sama_3451 at 4081.769 kb on + strand, within Sama_3451 at 4081.770 kb on - strand, within Sama_3451 at 4081.770 kb on - strand, within Sama_3451 at 4081.809 kb on + strand, within Sama_3451 at 4081.809 kb on + strand, within Sama_3451 at 4081.818 kb on - strand, within Sama_3451 at 4081.818 kb on - strand, within Sama_3451 at 4081.818 kb on - strand, within Sama_3451 at 4081.845 kb on - strand, within Sama_3451 at 4081.853 kb on - strand, within Sama_3451 at 4081.864 kb on - strand, within Sama_3451 at 4081.864 kb on - strand, within Sama_3451 at 4081.939 kb on - strand, within Sama_3451 at 4081.962 kb on - strand, within Sama_3451 at 4081.962 kb on - strand, within Sama_3451 at 4082.022 kb on + strand, within Sama_3451 at 4082.022 kb on + strand, within Sama_3451 at 4082.022 kb on + strand, within Sama_3451 at 4082.022 kb on + strand, within Sama_3451 at 4082.023 kb on - strand, within Sama_3451 at 4082.051 kb on + strand, within Sama_3451 at 4082.052 kb on - strand, within Sama_3451 at 4082.052 kb on - strand, within Sama_3451 at 4082.052 kb on - strand, within Sama_3451 at 4082.052 kb on - strand, within Sama_3451 at 4082.052 kb on - strand, within Sama_3451 at 4082.052 kb on - strand, within Sama_3451 at 4082.052 kb on - strand, within Sama_3451 at 4082.082 kb on - strand, within Sama_3451 at 4082.123 kb on + strand, within Sama_3451 at 4082.124 kb on - strand, within Sama_3451 at 4082.208 kb on + strand, within Sama_3451 at 4082.209 kb on - strand, within Sama_3451 at 4082.209 kb on - strand, within Sama_3451 at 4082.228 kb on + strand, within Sama_3451 at 4082.228 kb on + strand, within Sama_3451 at 4082.228 kb on + strand, within Sama_3451 at 4082.228 kb on + strand, within Sama_3451 at 4082.228 kb on + strand, within Sama_3451 at 4082.228 kb on + strand, within Sama_3451 at 4082.228 kb on + strand, within Sama_3451 at 4082.229 kb on - strand, within Sama_3451 at 4082.229 kb on - strand, within Sama_3451 at 4082.229 kb on - strand, within Sama_3451 at 4082.229 kb on - strand, within Sama_3451 at 4082.264 kb on + strand, within Sama_3451 at 4082.264 kb on + strand, within Sama_3451 at 4082.265 kb on - strand, within Sama_3451 at 4082.265 kb on - strand, within Sama_3451 at 4082.319 kb on + strand, within Sama_3451 at 4082.414 kb on + strand, within Sama_3451 at 4082.479 kb on + strand, within Sama_3451 at 4082.479 kb on + strand, within Sama_3451 at 4082.522 kb on + strand, within Sama_3451 at 4082.522 kb on + strand, within Sama_3451 at 4082.565 kb on + strand, within Sama_3451 at 4082.565 kb on + strand, within Sama_3451 at 4082.566 kb on - strand, within Sama_3451 at 4082.566 kb on - strand, within Sama_3451 at 4082.579 kb on + strand at 4082.580 kb on - strand at 4082.580 kb on - strand at 4082.648 kb on + strand at 4082.692 kb on - strand at 4082.722 kb on + strand at 4082.730 kb on - strand at 4082.730 kb on - strand at 4082.730 kb on - strand at 4082.753 kb on + strand at 4082.753 kb on + strand at 4082.753 kb on + strand at 4082.753 kb on + strand at 4082.754 kb on - strand at 4082.754 kb on - strand at 4082.754 kb on - strand at 4082.754 kb on - strand at 4082.754 kb on - strand at 4082.754 kb on - strand at 4082.790 kb on + strand at 4082.885 kb on + strand, within Sama_3452 at 4082.885 kb on + strand, within Sama_3452 at 4082.885 kb on + strand, within Sama_3452 at 4082.885 kb on + strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.886 kb on - strand, within Sama_3452 at 4082.910 kb on + strand, within Sama_3452 at 4082.911 kb on - strand, within Sama_3452 at 4082.914 kb on + strand, within Sama_3452 at 4082.915 kb on - strand, within Sama_3452 at 4082.985 kb on + strand, within Sama_3452 at 4082.986 kb on - strand, within Sama_3452 at 4082.986 kb on - strand, within Sama_3452 at 4082.997 kb on - strand, within Sama_3452 at 4082.997 kb on - strand, within Sama_3452 at 4082.997 kb on - strand, within Sama_3452 at 4083.069 kb on + strand, within Sama_3452 at 4083.070 kb on - strand, within Sama_3452 at 4083.070 kb on - strand, within Sama_3452 at 4083.074 kb on - strand, within Sama_3452 at 4083.197 kb on + strand, within Sama_3452 at 4083.197 kb on + strand, within Sama_3452 at 4083.197 kb on + strand, within Sama_3452 at 4083.198 kb on - strand, within Sama_3452 at 4083.283 kb on - strand, within Sama_3452 at 4083.283 kb on - strand, within Sama_3452 at 4083.396 kb on + strand at 4083.397 kb on - strand at 4083.397 kb on - strand at 4083.398 kb on + strand at 4083.398 kb on + strand at 4083.399 kb on - strand at 4083.399 kb on - strand at 4083.412 kb on + strand at 4083.412 kb on + strand at 4083.412 kb on + strand at 4083.414 kb on + strand at 4083.414 kb on + strand at 4083.414 kb on + strand at 4083.415 kb on - strand at 4083.415 kb on - strand at 4083.429 kb on + strand at 4083.429 kb on + strand at 4083.429 kb on + strand at 4083.429 kb on + strand at 4083.429 kb on + strand at 4083.429 kb on + strand at 4083.429 kb on + strand at 4083.429 kb on + strand at 4083.429 kb on + strand at 4083.430 kb on - strand at 4083.430 kb on - strand at 4083.430 kb on - strand at 4083.430 kb on - strand at 4083.430 kb on - strand at 4083.430 kb on - strand at 4083.430 kb on - strand at 4083.430 kb on - strand at 4083.447 kb on + strand at 4083.454 kb on - strand at 4083.454 kb on - strand at 4083.454 kb on - strand at 4083.505 kb on - strand at 4083.510 kb on - strand at 4083.517 kb on + strand at 4083.517 kb on + strand at 4083.517 kb on + strand at 4083.518 kb on - strand at 4083.518 kb on - strand at 4083.553 kb on + strand at 4083.553 kb on + strand at 4083.553 kb on + strand at 4083.553 kb on + strand at 4083.553 kb on + strand at 4083.554 kb on - strand at 4083.554 kb on - strand at 4083.561 kb on + strand at 4083.561 kb on + strand at 4083.573 kb on + strand at 4083.573 kb on + strand at 4083.573 kb on + strand at 4083.573 kb on + strand at 4083.573 kb on + strand at 4083.573 kb on + strand at 4083.574 kb on - strand at 4083.574 kb on - strand at 4083.574 kb on - strand at 4083.574 kb on - strand at 4083.574 kb on - strand at 4083.574 kb on - strand at 4083.574 kb on - strand at 4083.574 kb on - strand at 4083.574 kb on - strand at 4083.574 kb on - strand at 4083.612 kb on + strand at 4083.612 kb on + strand at 4083.613 kb on - strand at 4083.613 kb on - strand at 4083.613 kb on - strand at 4083.617 kb on + strand at 4083.618 kb on - strand at 4083.645 kb on - strand at 4083.645 kb on - strand at 4083.758 kb on + strand, within Sama_3453 at 4083.758 kb on + strand, within Sama_3453 at 4083.758 kb on + strand, within Sama_3453 at 4083.759 kb on - strand, within Sama_3453 at 4083.759 kb on - strand, within Sama_3453 at 4083.770 kb on + strand, within Sama_3453 at 4083.771 kb on - strand, within Sama_3453 at 4083.800 kb on + strand, within Sama_3453 at 4083.801 kb on - strand, within Sama_3453 at 4083.823 kb on + strand, within Sama_3453 at 4083.823 kb on + strand, within Sama_3453 at 4083.823 kb on + strand, within Sama_3453 at 4083.823 kb on + strand, within Sama_3453 at 4083.850 kb on + strand, within Sama_3453 at 4083.890 kb on + strand, within Sama_3453 at 4083.890 kb on + strand, within Sama_3453 at 4083.890 kb on + strand, within Sama_3453 at 4084.001 kb on + strand, within Sama_3453 at 4084.001 kb on + strand, within Sama_3453 at 4084.001 kb on + strand, within Sama_3453 at 4084.001 kb on + strand, within Sama_3453 at 4084.001 kb on + strand, within Sama_3453 at 4084.002 kb on - strand, within Sama_3453 at 4084.002 kb on - strand, within Sama_3453 at 4084.002 kb on - strand, within Sama_3453 at 4084.065 kb on + strand, within Sama_3453 at 4084.066 kb on - strand, within Sama_3453 at 4084.066 kb on - strand, within Sama_3453 at 4084.066 kb on - strand, within Sama_3453 at 4084.088 kb on + strand, within Sama_3453 at 4084.088 kb on + strand, within Sama_3453 at 4084.088 kb on + strand, within Sama_3453 at 4084.135 kb on - strand, within Sama_3453 at 4084.135 kb on - strand, within Sama_3453 at 4084.160 kb on + strand at 4084.160 kb on + strand at 4084.160 kb on + strand at 4084.160 kb on + strand at 4084.161 kb on - strand at 4084.171 kb on + strand at 4084.172 kb on - strand at 4084.200 kb on + strand at 4084.200 kb on + strand at 4084.200 kb on + strand at 4084.201 kb on - strand at 4084.201 kb on - strand at 4084.201 kb on - strand at 4084.208 kb on - strand at 4084.208 kb on - strand at 4084.208 kb on - strand at 4084.208 kb on - strand at 4084.233 kb on + strand at 4084.233 kb on + strand at 4084.233 kb on + strand at 4084.233 kb on + strand at 4084.233 kb on + strand at 4084.233 kb on + strand at 4084.233 kb on + strand at 4084.234 kb on - strand at 4084.234 kb on - strand at 4084.234 kb on - strand at 4084.234 kb on - strand at 4084.393 kb on - strand, within Sama_3454 at 4084.400 kb on + strand, within Sama_3454 at 4084.401 kb on - strand, within Sama_3454
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 200 mM remove 4,081,769 + Sama_3451 0.34 +0.4 4,081,769 + Sama_3451 0.34 -0.2 4,081,770 - Sama_3451 0.34 -1.0 4,081,770 - Sama_3451 0.34 +0.5 4,081,809 + Sama_3451 0.36 -0.5 4,081,809 + Sama_3451 0.36 -0.1 4,081,818 - Sama_3451 0.37 -0.7 4,081,818 - Sama_3451 0.37 -0.9 4,081,818 - Sama_3451 0.37 -0.5 4,081,845 - Sama_3451 0.39 +0.0 4,081,853 - Sama_3451 0.40 +0.6 4,081,864 - Sama_3451 0.40 -0.7 4,081,864 - Sama_3451 0.40 -2.5 4,081,939 - Sama_3451 0.46 -0.1 4,081,962 - Sama_3451 0.47 +0.2 4,081,962 - Sama_3451 0.47 -1.8 4,082,022 + Sama_3451 0.51 -0.7 4,082,022 + Sama_3451 0.51 +0.2 4,082,022 + Sama_3451 0.51 +0.5 4,082,022 + Sama_3451 0.51 +0.9 4,082,023 - Sama_3451 0.51 -1.0 4,082,051 + Sama_3451 0.53 +0.2 4,082,052 - Sama_3451 0.54 -0.0 4,082,052 - Sama_3451 0.54 -1.0 4,082,052 - Sama_3451 0.54 -1.0 4,082,052 - Sama_3451 0.54 -0.4 4,082,052 - Sama_3451 0.54 -0.4 4,082,052 - Sama_3451 0.54 -0.8 4,082,052 - Sama_3451 0.54 +0.5 4,082,082 - Sama_3451 0.56 -3.0 4,082,123 + Sama_3451 0.58 -0.7 4,082,124 - Sama_3451 0.59 +0.2 4,082,208 + Sama_3451 0.64 -0.6 4,082,209 - Sama_3451 0.64 -1.7 4,082,209 - Sama_3451 0.64 -0.4 4,082,228 + Sama_3451 0.66 -1.6 4,082,228 + Sama_3451 0.66 +0.3 4,082,228 + Sama_3451 0.66 -0.5 4,082,228 + Sama_3451 0.66 -0.1 4,082,228 + Sama_3451 0.66 -2.5 4,082,228 + Sama_3451 0.66 -0.0 4,082,228 + Sama_3451 0.66 -0.9 4,082,229 - Sama_3451 0.66 -0.3 4,082,229 - Sama_3451 0.66 -1.1 4,082,229 - Sama_3451 0.66 -0.6 4,082,229 - Sama_3451 0.66 +0.7 4,082,264 + Sama_3451 0.68 +0.7 4,082,264 + Sama_3451 0.68 -1.8 4,082,265 - Sama_3451 0.68 -0.1 4,082,265 - Sama_3451 0.68 -0.4 4,082,319 + Sama_3451 0.72 -0.1 4,082,414 + Sama_3451 0.79 -1.1 4,082,479 + Sama_3451 0.83 -0.4 4,082,479 + Sama_3451 0.83 -0.6 4,082,522 + Sama_3451 0.86 +0.4 4,082,522 + Sama_3451 0.86 +0.4 4,082,565 + Sama_3451 0.89 -1.4 4,082,565 + Sama_3451 0.89 -0.9 4,082,566 - Sama_3451 0.89 +0.6 4,082,566 - Sama_3451 0.89 +0.5 4,082,579 + +0.5 4,082,580 - -1.6 4,082,580 - -0.5 4,082,648 + -0.8 4,082,692 - +0.3 4,082,722 + -0.4 4,082,730 - +0.4 4,082,730 - -0.1 4,082,730 - -1.0 4,082,753 + -0.4 4,082,753 + -1.6 4,082,753 + -1.4 4,082,753 + +0.6 4,082,754 - +0.5 4,082,754 - -0.2 4,082,754 - -1.1 4,082,754 - -0.4 4,082,754 - -0.9 4,082,754 - -0.4 4,082,790 + +1.2 4,082,885 + Sama_3452 0.22 +0.5 4,082,885 + Sama_3452 0.22 -0.8 4,082,885 + Sama_3452 0.22 -1.1 4,082,885 + Sama_3452 0.22 -1.0 4,082,886 - Sama_3452 0.23 +0.8 4,082,886 - Sama_3452 0.23 -0.3 4,082,886 - Sama_3452 0.23 -0.4 4,082,886 - Sama_3452 0.23 -1.1 4,082,886 - Sama_3452 0.23 -0.8 4,082,886 - Sama_3452 0.23 -1.3 4,082,886 - Sama_3452 0.23 -1.1 4,082,886 - Sama_3452 0.23 -0.3 4,082,886 - Sama_3452 0.23 +0.1 4,082,886 - Sama_3452 0.23 -0.7 4,082,886 - Sama_3452 0.23 -0.0 4,082,910 + Sama_3452 0.26 -0.6 4,082,911 - Sama_3452 0.26 -1.9 4,082,914 + Sama_3452 0.26 -0.1 4,082,915 - Sama_3452 0.27 -1.4 4,082,985 + Sama_3452 0.37 -2.0 4,082,986 - Sama_3452 0.37 -2.1 4,082,986 - Sama_3452 0.37 +1.0 4,082,997 - Sama_3452 0.38 -1.4 4,082,997 - Sama_3452 0.38 -2.6 4,082,997 - Sama_3452 0.38 +1.8 4,083,069 + Sama_3452 0.49 -1.4 4,083,070 - Sama_3452 0.49 -2.8 4,083,070 - Sama_3452 0.49 +0.2 4,083,074 - Sama_3452 0.49 +0.0 4,083,197 + Sama_3452 0.67 -1.1 4,083,197 + Sama_3452 0.67 +0.8 4,083,197 + Sama_3452 0.67 -1.0 4,083,198 - Sama_3452 0.67 -1.0 4,083,283 - Sama_3452 0.79 +0.2 4,083,283 - Sama_3452 0.79 +0.2 4,083,396 + -1.8 4,083,397 - -1.2 4,083,397 - -0.6 4,083,398 + -2.6 4,083,398 + -0.6 4,083,399 - -2.0 4,083,399 - -1.1 4,083,412 + -0.1 4,083,412 + +2.2 4,083,412 + -0.8 4,083,414 + +1.2 4,083,414 + +0.6 4,083,414 + +0.0 4,083,415 - -2.5 4,083,415 - -0.4 4,083,429 + -0.8 4,083,429 + -1.1 4,083,429 + -0.4 4,083,429 + -0.8 4,083,429 + -1.4 4,083,429 + -0.0 4,083,429 + +0.2 4,083,429 + -0.1 4,083,429 + -1.4 4,083,430 - -1.2 4,083,430 - -2.1 4,083,430 - -1.1 4,083,430 - -1.3 4,083,430 - -1.1 4,083,430 - +0.2 4,083,430 - -0.5 4,083,430 - -0.3 4,083,447 + +0.2 4,083,454 - -1.0 4,083,454 - +0.8 4,083,454 - -0.4 4,083,505 - +0.5 4,083,510 - -0.8 4,083,517 + -0.1 4,083,517 + -0.3 4,083,517 + +0.2 4,083,518 - -0.5 4,083,518 - +1.1 4,083,553 + +0.7 4,083,553 + -1.8 4,083,553 + +0.5 4,083,553 + -0.4 4,083,553 + -0.1 4,083,554 - -0.3 4,083,554 - +0.2 4,083,561 + +0.0 4,083,561 + +1.2 4,083,573 + -0.0 4,083,573 + -0.5 4,083,573 + +1.6 4,083,573 + -1.2 4,083,573 + +0.4 4,083,573 + +0.1 4,083,574 - +0.4 4,083,574 - -0.2 4,083,574 - +0.3 4,083,574 - +0.1 4,083,574 - -0.8 4,083,574 - -0.2 4,083,574 - -0.4 4,083,574 - -0.6 4,083,574 - -0.8 4,083,574 - +1.2 4,083,612 + -0.7 4,083,612 + +0.2 4,083,613 - -0.1 4,083,613 - -0.1 4,083,613 - -1.6 4,083,617 + +0.3 4,083,618 - -0.8 4,083,645 - +0.0 4,083,645 - +0.3 4,083,758 + Sama_3453 0.18 +0.9 4,083,758 + Sama_3453 0.18 +0.1 4,083,758 + Sama_3453 0.18 +0.7 4,083,759 - Sama_3453 0.18 +1.0 4,083,759 - Sama_3453 0.18 -0.3 4,083,770 + Sama_3453 0.20 +1.1 4,083,771 - Sama_3453 0.20 -0.2 4,083,800 + Sama_3453 0.26 -0.4 4,083,801 - Sama_3453 0.26 +0.2 4,083,823 + Sama_3453 0.30 -0.9 4,083,823 + Sama_3453 0.30 -0.4 4,083,823 + Sama_3453 0.30 +0.2 4,083,823 + Sama_3453 0.30 +0.3 4,083,850 + Sama_3453 0.35 +0.3 4,083,890 + Sama_3453 0.42 -0.3 4,083,890 + Sama_3453 0.42 -0.2 4,083,890 + Sama_3453 0.42 +0.0 4,084,001 + Sama_3453 0.63 +0.0 4,084,001 + Sama_3453 0.63 +0.3 4,084,001 + Sama_3453 0.63 +0.0 4,084,001 + Sama_3453 0.63 -0.0 4,084,001 + Sama_3453 0.63 +0.1 4,084,002 - Sama_3453 0.63 -0.3 4,084,002 - Sama_3453 0.63 -0.1 4,084,002 - Sama_3453 0.63 +0.8 4,084,065 + Sama_3453 0.75 +0.6 4,084,066 - Sama_3453 0.75 +0.4 4,084,066 - Sama_3453 0.75 -0.5 4,084,066 - Sama_3453 0.75 -0.3 4,084,088 + Sama_3453 0.79 +0.1 4,084,088 + Sama_3453 0.79 +0.6 4,084,088 + Sama_3453 0.79 -0.6 4,084,135 - Sama_3453 0.87 -0.2 4,084,135 - Sama_3453 0.87 -2.0 4,084,160 + +0.3 4,084,160 + +0.7 4,084,160 + +0.6 4,084,160 + +0.1 4,084,161 - +0.2 4,084,171 + +0.6 4,084,172 - +0.1 4,084,200 + -1.5 4,084,200 + -0.2 4,084,200 + -1.0 4,084,201 - -0.4 4,084,201 - -0.8 4,084,201 - +0.3 4,084,208 - +0.1 4,084,208 - +0.2 4,084,208 - -0.5 4,084,208 - +0.0 4,084,233 + -0.6 4,084,233 + -0.1 4,084,233 + -0.1 4,084,233 + +1.0 4,084,233 + +0.2 4,084,233 + -0.3 4,084,233 + -1.4 4,084,234 - -0.8 4,084,234 - +1.2 4,084,234 - -0.4 4,084,234 - -0.1 4,084,393 - Sama_3454 0.38 +0.0 4,084,400 + Sama_3454 0.39 -2.1 4,084,401 - Sama_3454 0.39 +0.0
Or see this region's nucleotide sequence