Strain Fitness in Shewanella amazonensis SB2B around Sama_3383

Experiment: Choline chloride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 200 mM
4,009,173	+		Sama_3382	0.30	+0.6
4,009,173	+		Sama_3382	0.30	-0.1
4,009,174	-		Sama_3382	0.30	-0.3
4,009,174	-		Sama_3382	0.30	-1.6
4,009,285	-		Sama_3382	0.38	+0.1
4,009,289	+		Sama_3382	0.38	+0.1
4,009,289	+		Sama_3382	0.38	-0.6
4,009,290	-		Sama_3382	0.38	-0.2
4,009,317	+		Sama_3382	0.40	-0.2
4,009,317	+		Sama_3382	0.40	-0.1
4,009,317	+		Sama_3382	0.40	+0.6
4,009,317	+		Sama_3382	0.40	-1.4
4,009,317	+		Sama_3382	0.40	-2.0
4,009,318	-		Sama_3382	0.41	-0.9
4,009,318	-		Sama_3382	0.41	+1.7
4,009,318	-		Sama_3382	0.41	+1.7
4,009,318	-		Sama_3382	0.41	+0.3
4,009,318	-		Sama_3382	0.41	+0.5
4,009,318	-		Sama_3382	0.41	+0.6
4,009,318	-		Sama_3382	0.41	-0.1
4,009,318	-		Sama_3382	0.41	+0.5
4,009,318	-		Sama_3382	0.41	+0.7
4,009,331	+		Sama_3382	0.41	+1.1
4,009,381	+		Sama_3382	0.45	+0.6
4,009,381	+		Sama_3382	0.45	+0.3
4,009,381	+		Sama_3382	0.45	+0.1
4,009,381	+		Sama_3382	0.45	+0.0
4,009,382	-		Sama_3382	0.45	-0.9
4,009,386	+		Sama_3382	0.45	-0.2
4,009,386	+		Sama_3382	0.45	+1.7
4,009,386	+		Sama_3382	0.45	-0.0
4,009,404	+		Sama_3382	0.47	+0.7
4,009,404	+		Sama_3382	0.47	+1.1
4,009,404	+		Sama_3382	0.47	+2.3
4,009,405	-		Sama_3382	0.47	-0.5
4,009,405	-		Sama_3382	0.47	+0.1
4,009,407	+		Sama_3382	0.47	-0.7
4,009,437	-		Sama_3382	0.49	-0.6
4,009,570	-		Sama_3382	0.59	+0.4
4,009,570	-		Sama_3382	0.59	-0.3
4,009,593	+		Sama_3382	0.60	-0.7
4,009,679	-		Sama_3382	0.67	+0.4
4,009,719	+		Sama_3382	0.70	-0.4
4,009,719	+		Sama_3382	0.70	-0.2
4,009,719	+		Sama_3382	0.70	-0.3
4,009,720	-		Sama_3382	0.70	+0.3
4,009,720	-		Sama_3382	0.70	-0.7
4,009,770	+		Sama_3382	0.73	-0.6
4,009,817	+		Sama_3382	0.77	-0.1
4,009,882	+		Sama_3382	0.81	+2.5
4,009,958	+		Sama_3382	0.87	-1.0
4,009,982	+		Sama_3382	0.89	-0.8
4,009,982	+		Sama_3382	0.89	+2.3
4,009,982	+		Sama_3382	0.89	+1.3
4,010,017	+				-0.1
4,010,017	+				-0.4
4,010,017	+				-1.4
4,010,017	+				-0.1
4,010,017	+				-0.6
4,010,017	+				-0.3
4,010,017	+				+0.2
4,010,017	+				+1.1
4,010,017	+				-1.0
4,010,017	+				+0.7
4,010,017	+				-0.2
4,010,017	+				-1.4
4,010,018	-				-0.2
4,010,018	-				-0.4
4,010,018	-				-0.4
4,010,018	-				+0.7
4,010,018	-				+0.1
4,010,018	-				+0.8
4,010,018	-				+0.7
4,010,018	-				+1.1
4,010,018	-				+0.9
4,010,018	-				+0.1
4,010,018	-				-2.7
4,010,101	+				-0.3
4,010,101	+				+0.6
4,010,101	+				+1.1
4,010,101	+				+0.1
4,010,102	-				+2.7
4,010,102	-				+0.3
4,010,102	-				+0.1
4,010,102	-				-0.4
4,010,102	-				+1.6
4,010,103	+				+0.5
4,010,104	-				-0.1
4,010,104	-				-1.4
4,010,136	+				-0.4
4,010,136	+				-0.7
4,010,136	+				+0.6
4,010,136	+				+0.3
4,010,136	+				+0.8
4,010,136	+				+0.4
4,010,137	-				-0.4
4,010,137	-				-0.0
4,010,137	-				+1.5
4,010,137	-				+0.6
4,010,137	-				-0.3
4,010,137	-				+0.1
4,010,137	-				+1.1
4,010,137	-				+0.3
4,010,137	-				-0.3
4,010,137	-				-2.0
4,010,178	+		Sama_3383	0.13	-0.0
4,010,178	+		Sama_3383	0.13	-0.5
4,010,178	+		Sama_3383	0.13	+1.7
4,010,178	+		Sama_3383	0.13	-0.0
4,010,178	+		Sama_3383	0.13	+0.6
4,010,178	+		Sama_3383	0.13	-0.4
4,010,179	-		Sama_3383	0.13	+1.6
4,010,286	-		Sama_3383	0.43	+0.4
4,010,311	+		Sama_3383	0.50	-0.2
4,010,311	+		Sama_3383	0.50	+1.1
4,010,312	-		Sama_3383	0.50	+0.4
4,010,312	-		Sama_3383	0.50	+0.2
4,010,313	+		Sama_3383	0.50	-0.2
4,010,313	+		Sama_3383	0.50	+0.4
4,010,314	-		Sama_3383	0.50	+0.0
4,010,314	-		Sama_3383	0.50	-0.0
4,010,314	-		Sama_3383	0.50	-0.3
4,010,314	-		Sama_3383	0.50	-0.7
4,010,314	-		Sama_3383	0.50	-0.4
4,010,314	-		Sama_3383	0.50	-1.1
4,010,343	+		Sama_3383	0.58	-0.1
4,010,343	+		Sama_3383	0.58	-0.4
4,010,361	-		Sama_3383	0.63	+1.1
4,010,391	-		Sama_3383	0.72	+0.5
4,010,428	+		Sama_3383	0.82	+0.7
4,010,428	+		Sama_3383	0.82	+0.4
4,010,428	+		Sama_3383	0.82	+0.4
4,010,428	+		Sama_3383	0.82	-0.2
4,010,429	-		Sama_3383	0.82	+0.4
4,010,429	-		Sama_3383	0.82	+0.4
4,010,506	+				+1.1
4,010,520	+				+0.1
4,010,520	+				+0.1
4,010,520	+				-0.4
4,010,521	-				+0.3
4,010,521	-				-1.7
4,010,521	-				+0.0
4,010,528	+				+1.0
4,010,528	+				+0.7
4,010,528	+				-1.2
4,010,529	-				-0.9
4,010,529	-				-0.9
4,010,529	-				+0.2
4,010,613	-				+2.1
4,010,613	-				-0.9
4,010,623	+				+0.3
4,010,623	+				-0.2
4,010,623	+				-0.2
4,010,623	+				+0.2
4,010,623	+				+0.1
4,010,623	+				-0.9
4,010,623	+				-0.1
4,010,623	+				-0.2
4,010,623	+				+0.2
4,010,623	+				-0.1
4,010,624	-				-0.3
4,010,624	-				+0.1
4,010,624	-				-0.6
4,010,624	-				+0.3
4,010,624	-				+0.0
4,010,624	-				+1.0
4,010,624	-				+0.3
4,010,624	-				+0.3
4,010,646	+				+0.3
4,010,647	-				+0.3
4,010,647	-				-0.5
4,010,647	-				-0.4
4,010,647	-				-0.7
4,010,724	+		Sama_3384	0.14	+0.7
4,010,724	+		Sama_3384	0.14	-0.3
4,010,724	+		Sama_3384	0.14	-0.7
4,010,724	+		Sama_3384	0.14	+0.1
4,010,725	-		Sama_3384	0.14	+0.1
4,010,725	-		Sama_3384	0.14	+0.3
4,010,725	-		Sama_3384	0.14	-2.6
4,010,725	-		Sama_3384	0.14	+1.1
4,010,800	+		Sama_3384	0.19	-1.3
4,010,800	+		Sama_3384	0.19	-0.7
4,010,800	+		Sama_3384	0.19	-0.7
4,010,800	+		Sama_3384	0.19	-0.1
4,010,800	+		Sama_3384	0.19	+0.1
4,010,801	-		Sama_3384	0.19	+0.4
4,010,801	-		Sama_3384	0.19	-0.3
4,010,801	-		Sama_3384	0.19	-0.7
4,010,801	-		Sama_3384	0.19	+1.1
4,010,801	-		Sama_3384	0.19	-0.7
4,010,801	-		Sama_3384	0.19	-0.2
4,010,801	-		Sama_3384	0.19	+2.1
4,010,801	-		Sama_3384	0.19	-0.4
4,010,801	-		Sama_3384	0.19	-1.7
4,010,801	-		Sama_3384	0.19	-1.6
4,010,850	+		Sama_3384	0.22	+0.0
4,010,880	+		Sama_3384	0.23	+0.6
4,010,881	-		Sama_3384	0.23	-0.7
4,010,881	-		Sama_3384	0.23	-0.2
4,010,889	+		Sama_3384	0.24	+0.4
4,010,889	+		Sama_3384	0.24	+2.0
4,010,890	-		Sama_3384	0.24	+0.1
4,010,890	-		Sama_3384	0.24	+0.1
4,010,890	-		Sama_3384	0.24	-1.0
4,010,890	-		Sama_3384	0.24	-0.3
4,010,890	-		Sama_3384	0.24	+1.1
4,010,891	+		Sama_3384	0.24	-0.2
4,010,891	+		Sama_3384	0.24	-1.1
4,010,891	+		Sama_3384	0.24	-0.4
4,010,891	+		Sama_3384	0.24	+0.5
4,010,891	+		Sama_3384	0.24	-0.4
4,010,891	+		Sama_3384	0.24	-1.7
4,010,892	-		Sama_3384	0.24	+0.1
4,010,892	-		Sama_3384	0.24	+0.3
4,010,892	-		Sama_3384	0.24	-2.1
4,010,892	-		Sama_3384	0.24	-0.7
4,010,892	-		Sama_3384	0.24	+0.1
4,010,892	-		Sama_3384	0.24	-0.2
4,010,892	-		Sama_3384	0.24	-0.3
4,010,892	-		Sama_3384	0.24	-0.4
4,010,933	+		Sama_3384	0.27	+1.0
4,010,934	-		Sama_3384	0.27	+0.2
4,010,996	-		Sama_3384	0.30	-0.1
4,011,052	-		Sama_3384	0.34	-0.5
4,011,096	+		Sama_3384	0.36	+0.9
4,011,258	+		Sama_3384	0.46	-0.7
4,011,259	-		Sama_3384	0.46	+0.1
4,011,288	+		Sama_3384	0.48	+0.5
4,011,327	+		Sama_3384	0.50	-0.8
4,011,327	+		Sama_3384	0.50	+0.6
4,011,328	-		Sama_3384	0.50	+1.7
4,011,328	-		Sama_3384	0.50	+0.5
4,011,342	+		Sama_3384	0.51	+0.2
4,011,342	+		Sama_3384	0.51	-0.4
4,011,350	+		Sama_3384	0.52	+0.7
4,011,461	+		Sama_3384	0.58	+0.8
4,011,461	+		Sama_3384	0.58	-0.2