Strain Fitness in Shewanella amazonensis SB2B around Sama_2919

Experiment: Choline chloride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 200 mM
3,469,809	+		Sama_2918	0.49	-0.7
3,469,809	+		Sama_2918	0.49	+0.7
3,469,809	+		Sama_2918	0.49	-0.1
3,469,810	-		Sama_2918	0.49	-0.0
3,469,810	-		Sama_2918	0.49	+0.3
3,469,810	-		Sama_2918	0.49	+2.5
3,469,810	-		Sama_2918	0.49	-0.8
3,469,845	+		Sama_2918	0.52	-0.6
3,469,845	+		Sama_2918	0.52	-1.6
3,469,845	+		Sama_2918	0.52	-0.6
3,469,845	+		Sama_2918	0.52	+0.4
3,469,845	+		Sama_2918	0.52	+0.9
3,469,846	-		Sama_2918	0.52	+2.5
3,469,846	-		Sama_2918	0.52	+0.9
3,469,846	-		Sama_2918	0.52	+0.7
3,469,846	-		Sama_2918	0.52	-0.5
3,469,846	-		Sama_2918	0.52	-0.1
3,469,846	-		Sama_2918	0.52	+0.9
3,469,888	-		Sama_2918	0.55	-0.0
3,469,977	+		Sama_2918	0.61	+0.9
3,469,977	+		Sama_2918	0.61	-2.1
3,469,977	+		Sama_2918	0.61	+0.3
3,469,978	-		Sama_2918	0.61	+0.5
3,470,035	-		Sama_2918	0.66	-0.1
3,470,048	+		Sama_2918	0.67	-0.5
3,470,177	+		Sama_2918	0.76	+0.2
3,470,177	+		Sama_2918	0.76	+0.2
3,470,177	+		Sama_2918	0.76	+0.7
3,470,177	+		Sama_2918	0.76	+0.3
3,470,177	+		Sama_2918	0.76	+0.5
3,470,178	-		Sama_2918	0.76	+0.4
3,470,178	-		Sama_2918	0.76	+1.9
3,470,209	+		Sama_2918	0.78	-1.5
3,470,210	-		Sama_2918	0.78	-0.1
3,470,210	-		Sama_2918	0.78	+0.4
3,470,260	+		Sama_2918	0.82	+0.1
3,470,260	+		Sama_2918	0.82	+1.5
3,470,260	+		Sama_2918	0.82	+1.1
3,470,260	+		Sama_2918	0.82	+0.1
3,470,260	+		Sama_2918	0.82	-0.7
3,470,261	-		Sama_2918	0.82	+0.1
3,470,261	-		Sama_2918	0.82	-0.1
3,470,274	+		Sama_2918	0.83	+0.6
3,470,274	+		Sama_2918	0.83	-0.5
3,470,303	+		Sama_2918	0.85	-0.7
3,470,304	-		Sama_2918	0.85	+0.5
3,470,304	-		Sama_2918	0.85	+0.4
3,470,308	+		Sama_2918	0.85	-0.0
3,470,309	-		Sama_2918	0.86	+1.1
3,470,309	-		Sama_2918	0.86	-1.3
3,470,342	+		Sama_2918	0.88	-0.3
3,470,343	-		Sama_2918	0.88	-0.9
3,470,343	-		Sama_2918	0.88	-1.4
3,470,361	+		Sama_2918	0.89	-0.6
3,470,362	-		Sama_2918	0.89	-0.1
3,470,362	-		Sama_2918	0.89	+0.9
3,470,364	+		Sama_2918	0.90	+0.6
3,470,364	+		Sama_2918	0.90	+1.2
3,470,365	-		Sama_2918	0.90	+0.9
3,470,365	-		Sama_2918	0.90	-1.6
3,470,376	-				+0.1
3,470,406	+				+0.5
3,470,406	+				+0.4
3,470,407	-				-0.1
3,470,422	+				+0.8
3,470,422	+				+0.0
3,470,423	-				+0.7
3,470,423	-				-1.7
3,470,423	-				+1.2
3,470,443	+				+0.6
3,470,444	-				+0.2
3,470,446	+				-0.5
3,470,446	+				+0.4
3,470,446	+				+0.7
3,470,446	+				-0.2
3,470,446	+				+0.1
3,470,447	-				+0.5
3,470,452	+				+0.3
3,470,452	+				-0.3
3,470,453	-				+0.0
3,470,453	-				+0.4
3,470,453	-				-0.5
3,470,481	+				+0.9
3,470,481	+				-3.0
3,470,481	+				-0.2
3,470,481	+				-0.3
3,470,481	+				+0.6
3,470,482	-				-0.2
3,470,482	-				-0.7
3,470,482	-				+0.7
3,470,482	-				+0.3
3,470,484	+				+0.7
3,470,485	-				+0.4
3,470,485	-				-0.4
3,470,485	-				-0.6
3,470,505	+				-0.0
3,470,506	-				-1.7
3,470,549	+				-0.4
3,470,549	+				+0.5
3,470,549	+				-0.6
3,470,550	-				+1.3
3,470,550	-				+0.4
3,470,550	-				+0.1
3,470,550	-				+0.9
3,470,570	-				-0.6
3,470,602	-				+1.4
3,470,625	-				+1.5
3,470,625	-				-0.8
3,470,632	+				-1.1
3,470,704	-				+0.2
3,470,704	-				-0.5
3,470,705	+				-0.7
3,470,705	+				+0.9
3,470,705	+				-0.1
3,470,706	-				+0.5
3,470,706	-				+0.9
3,470,706	-				-0.6
3,470,706	-				+0.1
3,470,706	-				+1.0
3,470,727	+				+0.0
3,470,727	+				+0.9
3,470,728	-				-0.9
3,470,728	-				+0.2
3,470,728	-				+0.2
3,470,728	-				-0.8
3,470,728	-				+1.2
3,470,736	+				-0.1
3,470,737	-				+0.3
3,470,737	-				-0.1
3,470,737	-				-0.1
3,470,737	-				-0.6
3,470,743	+				-0.4
3,470,743	+				+0.6
3,470,744	-				-0.4
3,470,744	-				-0.5
3,470,744	-				-0.2
3,470,744	-				-1.6
3,470,756	+				+0.0
3,470,757	-				+0.3
3,470,789	+				-0.0
3,470,790	-				+1.9
3,470,790	-				+0.6
3,470,790	-				-0.3
3,470,790	-				-0.4
3,470,801	-				+0.6
3,470,809	-				+0.4
3,470,824	+				-0.7
3,470,824	+				-0.2
3,470,825	-				+1.1
3,470,962	+		Sama_2919	0.20	-2.1
3,470,962	+		Sama_2919	0.20	-0.7
3,470,963	-		Sama_2919	0.20	-1.9
3,470,963	-		Sama_2919	0.20	+1.0
3,470,963	-		Sama_2919	0.20	-0.0
3,470,963	-		Sama_2919	0.20	+1.2
3,470,987	-		Sama_2919	0.23	+2.5
3,470,987	-		Sama_2919	0.23	+0.4
3,470,995	+		Sama_2919	0.24	+1.0
3,471,021	-		Sama_2919	0.28	-0.3
3,471,078	+		Sama_2919	0.35	+1.9
3,471,079	-		Sama_2919	0.35	+1.0
3,471,079	-		Sama_2919	0.35	+1.0
3,471,239	+		Sama_2919	0.56	+1.0
3,471,409	-		Sama_2919	0.78	+1.7
3,471,461	-		Sama_2919	0.84	+1.3
3,471,473	+		Sama_2919	0.86	+0.0
3,471,473	+		Sama_2919	0.86	+2.2
3,471,473	+		Sama_2919	0.86	+2.0
3,471,473	+		Sama_2919	0.86	+0.9
3,471,474	-		Sama_2919	0.86	+1.2
3,471,474	-		Sama_2919	0.86	+2.2
3,471,522	-				+0.6
3,471,668	+				+0.5
3,471,668	+				+0.2
3,471,668	+				+0.9
3,471,756	+				+1.5
3,471,763	+				+0.2
3,471,763	+				+1.8
3,471,763	+				+1.3
3,471,763	+				+2.1
3,471,763	+				+2.2
3,471,764	-				-0.0
3,471,764	-				-0.4
3,471,764	-				+0.6
3,471,764	-				+0.9
3,471,764	-				+0.5
3,471,764	-				+0.1
3,471,764	-				+1.6
3,471,765	+				+0.1
3,471,782	+				+2.1
3,471,782	+				+1.4
3,471,783	-				-1.1
3,471,789	+				+0.5
3,471,789	+				+1.7
3,471,843	-				-0.2
3,471,882	+				+0.6
3,471,882	+				+1.0
3,471,883	-				+0.9
3,471,883	-				-0.1
3,471,883	-				+0.9
3,471,883	-				+1.9
3,471,883	-				-0.3
3,471,936	+				-0.2
3,471,937	-				-1.4
3,471,937	-				+0.5
3,471,937	-				-0.6
3,471,937	-				+0.5
3,471,937	-				+0.8
3,471,981	+				-1.1
3,471,982	-				-0.7
3,472,002	+		Sama_2920	0.11	-0.0
3,472,031	+		Sama_2920	0.14	+0.2
3,472,059	+		Sama_2920	0.16	+0.1
3,472,060	-		Sama_2920	0.16	-0.3
3,472,060	-		Sama_2920	0.16	-0.8
3,472,060	-		Sama_2920	0.16	-0.1
3,472,107	+		Sama_2920	0.20	-0.2
3,472,107	+		Sama_2920	0.20	+0.5
3,472,108	-		Sama_2920	0.20	-0.4
3,472,108	-		Sama_2920	0.20	-0.4
3,472,108	-		Sama_2920	0.20	+0.0
3,472,117	-		Sama_2920	0.21	+0.3
3,472,196	+		Sama_2920	0.28	-0.0
3,472,197	-		Sama_2920	0.28	-0.9
3,472,197	-		Sama_2920	0.28	+0.4
3,472,204	-		Sama_2920	0.29	+0.4
3,472,245	+		Sama_2920	0.32	+0.3
3,472,286	+		Sama_2920	0.36	+0.1
3,472,286	+		Sama_2920	0.36	-0.7
3,472,309	+		Sama_2920	0.38	+0.3
3,472,309	+		Sama_2920	0.38	+0.5
3,472,309	+		Sama_2920	0.38	-0.3
3,472,310	-		Sama_2920	0.38	+0.3
3,472,311	+		Sama_2920	0.38	+0.1
3,472,352	+		Sama_2920	0.42	+0.5
3,472,353	-		Sama_2920	0.42	-0.4
3,472,355	+		Sama_2920	0.42	-0.2
3,472,356	-		Sama_2920	0.42	+0.9
3,472,356	-		Sama_2920	0.42	+0.2
3,472,386	+		Sama_2920	0.45	+0.0
3,472,386	+		Sama_2920	0.45	-0.1
3,472,386	+		Sama_2920	0.45	-1.2
3,472,387	-		Sama_2920	0.45	+0.1
3,472,387	-		Sama_2920	0.45	+1.6
3,472,387	-		Sama_2920	0.45	-0.7
3,472,418	+		Sama_2920	0.47	-0.1
3,472,418	+		Sama_2920	0.47	-0.8
3,472,418	+		Sama_2920	0.47	-0.4
3,472,419	-		Sama_2920	0.47	+0.9
3,472,419	-		Sama_2920	0.47	+0.4
3,472,419	-		Sama_2920	0.47	-0.1
3,472,423	+		Sama_2920	0.48	+0.3
3,472,423	+		Sama_2920	0.48	-0.7
3,472,424	-		Sama_2920	0.48	-1.1
3,472,424	-		Sama_2920	0.48	+0.6
3,472,568	-		Sama_2920	0.60	+0.3
3,472,568	-		Sama_2920	0.60	+1.1
3,472,568	-		Sama_2920	0.60	+0.6