Strain Fitness in Shewanella amazonensis SB2B around Sama_1178

Experiment: Choline chloride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 200 mM
1,438,545	+		Sama_1177	0.40	-0.1
1,438,545	+		Sama_1177	0.40	+0.4
1,438,546	-		Sama_1177	0.40	-0.1
1,438,546	-		Sama_1177	0.40	+0.4
1,438,546	-		Sama_1177	0.40	-1.0
1,438,546	-		Sama_1177	0.40	+0.5
1,438,546	-		Sama_1177	0.40	+0.0
1,438,597	+		Sama_1177	0.44	+1.3
1,438,597	+		Sama_1177	0.44	+0.2
1,438,666	+		Sama_1177	0.48	+0.1
1,438,667	-		Sama_1177	0.48	-0.5
1,438,766	-		Sama_1177	0.55	+0.7
1,438,793	+		Sama_1177	0.57	+1.3
1,438,800	+		Sama_1177	0.57	-1.0
1,438,800	+		Sama_1177	0.57	+1.0
1,438,936	+		Sama_1177	0.66	-0.9
1,438,937	-		Sama_1177	0.66	+1.1
1,438,960	-		Sama_1177	0.68	+0.0
1,438,988	+		Sama_1177	0.70	-0.1
1,438,988	+		Sama_1177	0.70	-0.1
1,438,988	+		Sama_1177	0.70	-0.7
1,438,989	-		Sama_1177	0.70	+0.3
1,438,989	-		Sama_1177	0.70	+0.2
1,439,045	+		Sama_1177	0.73	-0.9
1,439,049	+		Sama_1177	0.74	-0.3
1,439,049	+		Sama_1177	0.74	+0.8
1,439,049	+		Sama_1177	0.74	+0.5
1,439,050	-		Sama_1177	0.74	+0.6
1,439,112	+		Sama_1177	0.78	+1.5
1,439,121	+		Sama_1177	0.78	+0.5
1,439,175	+		Sama_1177	0.82	-0.9
1,439,175	+		Sama_1177	0.82	-1.7
1,439,175	+		Sama_1177	0.82	+2.3
1,439,175	+		Sama_1177	0.82	+0.0
1,439,176	-		Sama_1177	0.82	-0.0
1,439,201	+		Sama_1177	0.84	+0.3
1,439,215	-		Sama_1177	0.84	-0.0
1,439,215	-		Sama_1177	0.84	+0.7
1,439,231	+		Sama_1177	0.86	+0.1
1,439,232	-		Sama_1177	0.86	-0.6
1,439,241	+		Sama_1177	0.86	-1.1
1,439,242	-		Sama_1177	0.86	-0.3
1,439,288	+		Sama_1177	0.89	-0.5
1,439,288	+		Sama_1177	0.89	+0.7
1,439,288	+		Sama_1177	0.89	+0.3
1,439,316	+				+0.7
1,439,316	+				+0.2
1,439,317	-				+0.1
1,439,318	+				-0.4
1,439,318	+				-1.5
1,439,318	+				+0.4
1,439,331	-				-0.6
1,439,492	+				+0.7
1,439,492	+				+0.1
1,439,492	+				-0.4
1,439,492	+				-0.3
1,439,492	+				-1.3
1,439,492	+				+0.2
1,439,493	-				+1.7
1,439,493	-				-1.6
1,439,493	-				-1.4
1,439,493	-				+0.7
1,439,493	-				-0.9
1,439,493	-				-0.0
1,439,493	-				-1.1
1,439,530	+				-1.7
1,439,556	+				+0.1
1,439,556	+				+0.5
1,439,556	+				-0.1
1,439,556	+				+1.7
1,439,557	-				+0.4
1,439,566	+				-0.3
1,439,581	-				+1.0
1,439,587	+				-1.2
1,439,588	-				-0.1
1,439,588	-				-0.4
1,439,588	-				+0.1
1,439,596	+				+0.2
1,439,782	+		Sama_1178	0.33	+0.4
1,439,796	+		Sama_1178	0.35	+0.2
1,439,797	-		Sama_1178	0.35	+0.4
1,439,797	-		Sama_1178	0.35	-0.9
1,439,797	-		Sama_1178	0.35	+1.5
1,439,797	-		Sama_1178	0.35	-0.9
1,439,850	+		Sama_1178	0.43	-1.1
1,439,850	+		Sama_1178	0.43	-0.3
1,439,877	+		Sama_1178	0.47	+1.2
1,439,878	-		Sama_1178	0.47	-0.6
1,439,955	+		Sama_1178	0.57	-2.6
1,439,955	+		Sama_1178	0.57	-0.8
1,439,955	+		Sama_1178	0.57	-0.6
1,439,960	+		Sama_1178	0.58	-0.1
1,439,960	+		Sama_1178	0.58	+0.6
1,439,960	+		Sama_1178	0.58	+0.7
1,439,961	-		Sama_1178	0.58	-1.0
1,439,976	+		Sama_1178	0.60	+0.2
1,439,976	+		Sama_1178	0.60	+0.3
1,439,977	-		Sama_1178	0.61	+0.1
1,439,977	-		Sama_1178	0.61	-0.3
1,439,977	-		Sama_1178	0.61	+0.7
1,439,987	+		Sama_1178	0.62	+0.1
1,440,026	+		Sama_1178	0.67	+0.7
1,440,027	-		Sama_1178	0.68	+0.3
1,440,147	+		Sama_1178	0.84	+0.5
1,440,257	+				-1.3
1,440,257	+				+1.4
1,440,257	+				+1.2
1,440,257	+				+1.4
1,440,258	-				-0.6
1,440,258	-				-1.2
1,440,258	-				-0.6
1,440,258	-				-0.6
1,440,334	+		Sama_1179	0.26	-0.6
1,440,433	+		Sama_1179	0.68	-0.9
1,440,433	+		Sama_1179	0.68	-0.5
1,440,452	-		Sama_1179	0.77	-0.3
1,440,456	+		Sama_1179	0.78	-2.1
1,440,456	+		Sama_1179	0.78	-0.5
1,440,457	-		Sama_1179	0.79	+1.1
1,440,457	-		Sama_1179	0.79	-0.6
1,440,505	+				+1.7
1,440,505	+				+0.9
1,440,505	+				-0.3
1,440,505	+				-0.3
1,440,505	+				-0.6
1,440,505	+				-0.0
1,440,505	+				+0.1
1,440,506	-				+0.2
1,440,506	-				+0.9
1,440,506	-				+0.3
1,440,506	-				-1.0
1,440,506	-				-0.4
1,440,506	-				+1.7
1,440,506	-				-0.3
1,440,506	-				+0.5
1,440,522	+				+1.7
1,440,523	-				+1.3
1,440,523	-				-1.1
1,440,523	-				-0.6
1,440,523	-				+1.4
1,440,523	-				+0.7
1,440,544	+				+0.3
1,440,544	+				+1.0
1,440,545	-				-0.2
1,440,545	-				+1.1
1,440,561	+				-0.2
1,440,562	-				+1.0
1,440,574	+				+0.7
1,440,574	+				+0.1
1,440,575	-				+0.4
1,440,575	-				+1.3
1,440,575	-				-0.9
1,440,575	-				+0.1
1,440,581	+				+0.6
1,440,614	+				-2.3
1,440,614	+				-1.1
1,440,614	+				-0.6
1,440,615	-				-0.9
1,440,615	-				-0.9
1,440,644	-				+1.7
1,440,682	+				-0.1
1,440,723	+				-0.3
1,440,723	+				+0.1
1,440,724	-				-0.0
1,440,724	-				+0.3
1,440,757	+				+0.1
1,440,757	+				-1.3
1,440,757	+				+0.0
1,440,758	-				-0.1
1,440,768	+				-0.3
1,440,768	+				+0.5
1,440,768	+				-0.0
1,440,768	+				+1.3
1,440,769	-				+1.0
1,440,769	-				-0.6
1,440,778	-				+0.3
1,440,778	-				-0.5
1,440,895	-				-0.3
1,440,943	+				-0.0
1,440,943	+				-0.3
1,440,943	+				+0.1
1,440,943	+				-0.0
1,440,943	+				+3.0
1,440,944	-				-0.6
1,440,944	-				-0.3
1,440,967	+				-0.1
1,440,967	+				+1.0
1,440,968	-				-1.4
1,440,968	-				+0.4
1,440,968	-				+0.0
1,440,980	+				+0.2
1,440,980	+				-1.3
1,440,980	+				+1.7
1,441,011	+				+0.7
1,441,047	+				+0.1
1,441,246	+		Sama_1180	0.17	+0.2
1,441,247	-		Sama_1180	0.17	+1.0
1,441,256	+		Sama_1180	0.17	+0.2
1,441,257	-		Sama_1180	0.17	-0.4
1,441,257	-		Sama_1180	0.17	+0.5
1,441,257	-		Sama_1180	0.17	+0.2