Strain Fitness in Shewanella amazonensis SB2B around Sama_0638

Experiment: Choline chloride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 200 mM
793,115	+		Sama_0636	0.76	-0.2
793,135	+		Sama_0636	0.78	-0.0
793,136	-		Sama_0636	0.78	-0.2
793,136	-		Sama_0636	0.78	+0.6
793,136	-		Sama_0636	0.78	-0.3
793,136	-		Sama_0636	0.78	+0.9
793,136	-		Sama_0636	0.78	-0.4
793,136	-		Sama_0636	0.78	-0.1
793,210	+		Sama_0636	0.84	-0.8
793,211	-		Sama_0636	0.84	-0.3
793,249	-		Sama_0636	0.88	-1.7
793,249	-		Sama_0636	0.88	+0.3
793,321	+				+1.5
793,407	+				-0.2
793,443	-				+0.6
793,460	+				-2.3
793,460	+				-0.3
793,460	+				+1.9
793,460	+				-0.2
793,460	+				+1.2
793,460	+				-0.5
793,460	+				-0.5
793,460	+				+0.4
793,460	+				-0.4
793,460	+				-0.6
793,460	+				+0.9
793,461	-				+0.2
793,461	-				-0.2
793,461	-				-0.9
793,461	-				-0.2
793,461	-				-1.2
793,461	-				+0.1
793,461	-				+0.2
793,461	-				+0.6
793,461	-				-0.6
793,461	-				-0.5
793,562	+		Sama_0637	0.17	-0.1
793,562	+		Sama_0637	0.17	-0.7
793,562	+		Sama_0637	0.17	-1.4
793,562	+		Sama_0637	0.17	-0.7
793,562	+		Sama_0637	0.17	-0.8
793,562	+		Sama_0637	0.17	-1.5
793,563	-		Sama_0637	0.17	-0.2
793,563	-		Sama_0637	0.17	+0.2
793,563	-		Sama_0637	0.17	-1.0
793,563	-		Sama_0637	0.17	-0.8
793,565	+		Sama_0637	0.17	-1.1
793,565	+		Sama_0637	0.17	-1.7
793,566	-		Sama_0637	0.18	-0.8
793,566	-		Sama_0637	0.18	+0.5
793,566	-		Sama_0637	0.18	-0.7
793,566	-		Sama_0637	0.18	+0.9
793,617	-		Sama_0637	0.26	-1.9
793,617	-		Sama_0637	0.26	-0.4
793,617	-		Sama_0637	0.26	-0.3
793,617	-		Sama_0637	0.26	-1.4
793,625	+		Sama_0637	0.27	-1.1
793,625	+		Sama_0637	0.27	+0.1
793,625	+		Sama_0637	0.27	+0.2
793,626	-		Sama_0637	0.28	+1.5
793,626	-		Sama_0637	0.28	+0.6
793,626	-		Sama_0637	0.28	-0.3
793,737	+		Sama_0637	0.46	+0.5
793,797	+		Sama_0637	0.56	+0.0
793,798	-		Sama_0637	0.56	-0.3
793,798	-		Sama_0637	0.56	-2.0
793,798	-		Sama_0637	0.56	+0.3
793,801	+		Sama_0637	0.56	-0.7
793,801	+		Sama_0637	0.56	-0.8
793,801	+		Sama_0637	0.56	-0.1
793,801	+		Sama_0637	0.56	-1.9
793,801	+		Sama_0637	0.56	-1.2
793,801	+		Sama_0637	0.56	+0.3
793,802	-		Sama_0637	0.57	-1.6
793,802	-		Sama_0637	0.57	-0.1
793,802	-		Sama_0637	0.57	-0.2
793,802	-		Sama_0637	0.57	-0.1
793,802	-		Sama_0637	0.57	-1.4
793,914	+		Sama_0637	0.75	+2.5
793,980	-		Sama_0637	0.86	-2.8
793,980	-		Sama_0637	0.86	-0.6
794,052	+				-0.5
794,052	+				-0.3
794,066	+				-1.7
794,066	+				-0.5
794,087	-				-1.3
794,087	-				-0.4
794,145	+				+0.4
794,145	+				-0.8
794,145	+				-1.4
794,145	+				+0.5
794,145	+				+1.4
794,146	-				-0.9
794,146	-				-0.1
794,146	-				-0.1
794,146	-				-0.5
794,146	-				-0.7
794,146	-				+0.5
794,146	-				+0.2
794,146	-				+0.7
794,146	-				+0.2
794,146	-				+0.3
794,146	-				-1.2
794,151	+				+0.2
794,151	+				-0.5
794,151	+				-0.1
794,151	+				-0.8
794,152	-				+0.1
794,152	-				-1.7
794,152	-				+0.3
794,178	-				-1.4
794,186	-				+1.3
794,186	-				+0.2
794,186	-				-1.0
794,250	+		Sama_0638	0.14	-2.1
794,250	+		Sama_0638	0.14	+0.2
794,268	+		Sama_0638	0.15	-0.1
794,268	+		Sama_0638	0.15	-0.2
794,268	+		Sama_0638	0.15	-2.1
794,269	-		Sama_0638	0.16	-0.4
794,269	-		Sama_0638	0.16	-0.2
794,271	+		Sama_0638	0.16	-0.1
794,271	+		Sama_0638	0.16	-0.3
794,271	+		Sama_0638	0.16	-1.1
794,271	+		Sama_0638	0.16	-0.4
794,271	+		Sama_0638	0.16	-0.6
794,271	+		Sama_0638	0.16	+0.2
794,271	+		Sama_0638	0.16	-2.1
794,271	+		Sama_0638	0.16	+0.6
794,272	-		Sama_0638	0.16	-2.0
794,272	-		Sama_0638	0.16	-0.5
794,272	-		Sama_0638	0.16	-0.5
794,272	-		Sama_0638	0.16	-1.1
794,272	-		Sama_0638	0.16	-0.4
794,272	-		Sama_0638	0.16	-0.3
794,272	-		Sama_0638	0.16	+0.5
794,272	-		Sama_0638	0.16	+0.7
794,368	+		Sama_0638	0.23	-0.1
794,369	-		Sama_0638	0.23	+0.6
794,369	-		Sama_0638	0.23	+0.3
794,369	-		Sama_0638	0.23	+0.1
794,471	+		Sama_0638	0.30	+0.3
794,521	+		Sama_0638	0.34	+0.4
794,521	+		Sama_0638	0.34	+0.3
794,522	-		Sama_0638	0.34	-0.1
794,522	-		Sama_0638	0.34	-1.6
794,522	-		Sama_0638	0.34	-0.0
794,522	-		Sama_0638	0.34	-0.7
794,561	+		Sama_0638	0.37	+0.1
794,616	+		Sama_0638	0.41	-2.0
794,617	-		Sama_0638	0.41	-0.1
794,617	-		Sama_0638	0.41	+0.5
794,646	+		Sama_0638	0.43	+0.1
794,647	-		Sama_0638	0.43	+0.2
794,647	-		Sama_0638	0.43	-0.3
794,670	-		Sama_0638	0.45	-0.0
794,716	-		Sama_0638	0.48	-1.0
794,731	+		Sama_0638	0.49	-0.7
794,731	+		Sama_0638	0.49	-0.0
794,732	-		Sama_0638	0.49	+0.3
794,774	+		Sama_0638	0.52	+0.3
794,775	-		Sama_0638	0.52	+0.6
794,811	-		Sama_0638	0.55	+0.0
794,811	-		Sama_0638	0.55	-0.8
794,811	-		Sama_0638	0.55	+0.4
794,824	+		Sama_0638	0.56	+0.2
794,827	+		Sama_0638	0.56	-0.1
794,827	+		Sama_0638	0.56	+0.7
794,828	-		Sama_0638	0.56	+0.1
794,828	-		Sama_0638	0.56	-0.1
794,833	+		Sama_0638	0.56	+0.4
794,841	+		Sama_0638	0.57	+1.5
794,842	-		Sama_0638	0.57	-0.1
794,886	+		Sama_0638	0.60	-1.5
794,967	+		Sama_0638	0.66	+0.7
795,013	+		Sama_0638	0.69	+0.3
795,014	-		Sama_0638	0.69	+0.0
795,025	+		Sama_0638	0.70	+1.1
795,025	+		Sama_0638	0.70	+0.2
795,026	-		Sama_0638	0.70	+1.3
795,026	-		Sama_0638	0.70	-0.7
795,040	+		Sama_0638	0.71	-2.0
795,048	+		Sama_0638	0.72	-1.1
795,049	-		Sama_0638	0.72	-0.2
795,049	-		Sama_0638	0.72	-0.6
795,049	-		Sama_0638	0.72	+0.4
795,087	-		Sama_0638	0.75	-0.5
795,087	-		Sama_0638	0.75	+0.2
795,087	-		Sama_0638	0.75	-0.5
795,092	+		Sama_0638	0.75	+2.1
795,092	+		Sama_0638	0.75	+0.1
795,092	+		Sama_0638	0.75	-0.5
795,093	-		Sama_0638	0.75	+0.2
795,093	-		Sama_0638	0.75	+0.2
795,093	-		Sama_0638	0.75	+0.2
795,102	+		Sama_0638	0.76	-0.5
795,103	-		Sama_0638	0.76	-2.1
795,170	-		Sama_0638	0.81	-2.1
795,170	-		Sama_0638	0.81	+0.5
795,190	+		Sama_0638	0.82	+0.3
795,193	+		Sama_0638	0.82	+0.6
795,193	+		Sama_0638	0.82	+1.4
795,193	+		Sama_0638	0.82	+1.9
795,194	-		Sama_0638	0.83	+0.0
795,194	-		Sama_0638	0.83	+0.7
795,194	-		Sama_0638	0.83	-1.0
795,194	-		Sama_0638	0.83	-0.3
795,194	-		Sama_0638	0.83	-2.2
795,194	-		Sama_0638	0.83	-0.1
795,209	+		Sama_0638	0.84	+0.2
795,209	+		Sama_0638	0.84	+1.5
795,210	-		Sama_0638	0.84	+0.9
795,210	-		Sama_0638	0.84	-0.9
795,253	+		Sama_0638	0.87	+0.3
795,336	+				+0.3
795,336	+				-0.6
795,336	+				-0.1
795,337	-				-0.2
795,337	-				-0.1
795,359	-				+1.5
795,365	+				-0.1
795,414	+				-0.1
795,415	-				-0.0
795,415	-				+1.0
795,567	+		Sama_0639	0.26	+0.7
795,567	+		Sama_0639	0.26	+0.9
795,567	+		Sama_0639	0.26	-0.1
795,568	-		Sama_0639	0.26	+0.6
795,568	-		Sama_0639	0.26	-0.8
795,568	-		Sama_0639	0.26	+0.6
795,568	-		Sama_0639	0.26	-0.4
795,568	-		Sama_0639	0.26	-0.4
795,581	+		Sama_0639	0.29	-0.9
795,582	-		Sama_0639	0.29	+0.7
795,582	-		Sama_0639	0.29	-0.5
795,622	+		Sama_0639	0.36	+0.2
795,622	+		Sama_0639	0.36	+0.6
795,623	-		Sama_0639	0.37	-0.7
795,742	-		Sama_0639	0.59	-0.0
795,742	-		Sama_0639	0.59	+0.9
795,806	+		Sama_0639	0.71	-0.5
795,806	+		Sama_0639	0.71	-0.1
795,809	-		Sama_0639	0.72	-0.2
795,809	-		Sama_0639	0.72	-0.3
795,878	+		Sama_0639	0.85	-0.3
795,878	+		Sama_0639	0.85	-0.3
795,879	-		Sama_0639	0.85	-1.1
795,879	-		Sama_0639	0.85	+1.0
795,879	-		Sama_0639	0.85	-0.7
795,981	+				+1.1
795,982	-				-0.7
795,982	-				+0.2
795,982	-				+0.0
795,984	+				+1.2
795,984	+				-0.3
795,984	+				+0.5
795,984	+				-2.4
795,984	+				+0.2
795,985	-				-0.1
795,985	-				-0.5
795,985	-				+1.2
795,985	-				-0.4
795,987	+				-0.5
795,988	-				+0.2
796,047	-		Sama_0640	0.28	-0.7
796,047	-		Sama_0640	0.28	+0.4
796,047	-		Sama_0640	0.28	+0.2
796,052	-		Sama_0640	0.31	-0.2
796,052	-		Sama_0640	0.31	-0.1
796,105	+		Sama_0640	0.54	-0.7
796,106	-		Sama_0640	0.55	-0.3
796,106	-		Sama_0640	0.55	-0.7
796,106	-		Sama_0640	0.55	-1.2
796,120	+		Sama_0640	0.61	+0.9
796,121	-		Sama_0640	0.61	-1.1
796,193	+				+0.4
796,193	+				-1.1
796,193	+				-0.9
796,193	+				-1.2
796,193	+				-0.4
796,193	+				-1.4
796,193	+				-0.7
796,193	+				+0.9
796,193	+				-0.3
796,193	+				-0.1
796,193	+				+0.1
796,193	+				+1.3
796,193	+				+0.3
796,193	+				+0.2
796,194	-				-0.9
796,194	-				-0.1
796,194	-				-0.3
796,194	-				-1.0
796,194	-				-1.9
796,194	-				+0.3
796,194	-				-0.3
796,194	-				-1.2
796,194	-				+0.7
796,194	-				-2.6
796,194	-				-1.3
796,195	+				-0.7
796,195	+				-0.7
796,195	+				+1.0
796,195	+				+0.5
796,196	-				-0.0
796,196	-				-0.1
796,196	-				-0.2
796,196	-				+2.3
796,196	-				-1.2
796,196	-				-1.0
796,196	-				-0.6
796,212	-				+0.2
796,212	-				-0.9
796,212	-				+1.3
796,212	-				-0.2
796,226	+				-1.0
796,226	+				+0.3
796,227	-				+0.1
796,227	-				+1.2
796,227	-				-0.3
796,252	-				+0.2
796,297	+				-0.1
796,297	+				-0.0
796,297	+				+0.9
796,297	+				-0.3
796,297	+				+0.2
796,298	-				+0.6
796,298	-				-0.1
796,298	-				+0.1
796,298	-				+0.5
796,336	+		Sama_0641	0.13	-0.4
796,336	+		Sama_0641	0.13	+0.2
796,336	+		Sama_0641	0.13	+0.0
796,336	+		Sama_0641	0.13	-0.7
796,336	+		Sama_0641	0.13	-0.7
796,336	+		Sama_0641	0.13	+1.8
796,337	-		Sama_0641	0.13	+0.6
796,337	-		Sama_0641	0.13	+1.5
796,337	-		Sama_0641	0.13	+0.4
796,337	-		Sama_0641	0.13	-0.3
796,337	-		Sama_0641	0.13	-0.9
796,337	-		Sama_0641	0.13	-0.1
796,337	-		Sama_0641	0.13	-1.0
796,337	-		Sama_0641	0.13	+0.0
796,337	-		Sama_0641	0.13	+0.3