Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4206 and Dshi_4207 are separated by 70 nucleotides Dshi_4207 and Dshi_4208 are separated by 15 nucleotides Dshi_4208 and Dshi_4209 overlap by 4 nucleotides
Dshi_4206: Dshi_4206 - aminotransferase class IV (RefSeq), at 53,586 to 54,509
_4206
Dshi_4207: Dshi_4207 - protein of unknown function DUF900 hydrolase family protein (RefSeq), at 54,580 to 55,551
_4207
Dshi_4208: Dshi_4208 - hypothetical protein (RefSeq), at 55,567 to 56,109
_4208
Dshi_4209: Dshi_4209 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 56,106 to 57,956
_4209
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 53.812 kb on + strand, within Dshi_4206 at 53.964 kb on + strand, within Dshi_4206 at 54.168 kb on + strand, within Dshi_4206 at 54.271 kb on + strand, within Dshi_4206 at 54.644 kb on + strand at 54.747 kb on + strand, within Dshi_4207 at 54.814 kb on + strand, within Dshi_4207 at 54.883 kb on + strand, within Dshi_4207 at 54.883 kb on + strand, within Dshi_4207 at 54.929 kb on + strand, within Dshi_4207 at 55.157 kb on + strand, within Dshi_4207 at 55.413 kb on + strand, within Dshi_4207 at 55.475 kb on + strand at 55.621 kb on - strand at 55.655 kb on + strand, within Dshi_4208 at 55.658 kb on - strand, within Dshi_4208 at 55.743 kb on + strand, within Dshi_4208 at 55.932 kb on + strand at 56.308 kb on + strand, within Dshi_4209 at 56.373 kb on - strand, within Dshi_4209 at 56.409 kb on + strand, within Dshi_4209
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 53,812 + Dshi_4206 0.24 +1.6 53,964 + Dshi_4206 0.41 +1.1 54,168 + Dshi_4206 0.63 +0.1 54,271 + Dshi_4206 0.74 -2.5 54,644 + +1.1 54,747 + Dshi_4207 0.17 +0.7 54,814 + Dshi_4207 0.24 -0.1 54,883 + Dshi_4207 0.31 -1.9 54,883 + Dshi_4207 0.31 -1.2 54,929 + Dshi_4207 0.36 -2.5 55,157 + Dshi_4207 0.59 -3.7 55,413 + Dshi_4207 0.86 +3.1 55,475 + -0.9 55,621 - +1.1 55,655 + Dshi_4208 0.16 -0.6 55,658 - Dshi_4208 0.17 -0.1 55,743 + Dshi_4208 0.32 +0.5 55,932 + +1.7 56,308 + Dshi_4209 0.11 +0.1 56,373 - Dshi_4209 0.14 +3.1 56,409 + Dshi_4209 0.16 -0.7
Or see this region's nucleotide sequence