Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4172 and Dshi_4173 are separated by 137 nucleotides Dshi_4173 and Dshi_4174 are separated by 70 nucleotides Dshi_4174 and Dshi_4175 are separated by 63 nucleotides
Dshi_4172: Dshi_4172 - transcriptional regulator, AraC family (RefSeq), at 21,403 to 22,290
_4172
Dshi_4173: Dshi_4173 - hypothetical protein (RefSeq), at 22,428 to 23,387
_4173
Dshi_4174: Dshi_4174 - hypothetical protein (RefSeq), at 23,458 to 24,015
_4174
Dshi_4175: Dshi_4175 - hypothetical protein (RefSeq), at 24,079 to 25,098
_4175
Position (kb) 22
23
24 Strain fitness (log2 ratio) -2
-1
0
1 at 21.481 kb on + strand at 21.511 kb on + strand, within Dshi_4172 at 21.678 kb on - strand, within Dshi_4172 at 21.689 kb on + strand at 22.119 kb on - strand, within Dshi_4172 at 22.329 kb on + strand at 22.580 kb on + strand, within Dshi_4173 at 22.715 kb on + strand, within Dshi_4173 at 23.679 kb on + strand, within Dshi_4174 at 23.708 kb on + strand, within Dshi_4174 at 23.848 kb on + strand, within Dshi_4174 at 23.856 kb on - strand, within Dshi_4174 at 24.157 kb on - strand at 24.157 kb on - strand at 24.359 kb on + strand, within Dshi_4175
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 21,481 + +1.1 21,511 + Dshi_4172 0.12 -0.6 21,678 - Dshi_4172 0.31 -1.5 21,689 + +0.1 22,119 - Dshi_4172 0.81 +0.1 22,329 + +1.7 22,580 + Dshi_4173 0.16 +0.3 22,715 + Dshi_4173 0.30 +0.1 23,679 + Dshi_4174 0.40 +0.1 23,708 + Dshi_4174 0.45 -0.6 23,848 + Dshi_4174 0.70 +1.1 23,856 - Dshi_4174 0.71 -1.7 24,157 - +0.8 24,157 - -2.2 24,359 + Dshi_4175 0.27 +0.5
Or see this region's nucleotide sequence