Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4118 and Dshi_4119 are separated by 131 nucleotides Dshi_4119 and Dshi_4120 overlap by 4 nucleotides Dshi_4120 and Dshi_4121 are separated by 147 nucleotides
Dshi_4118: Dshi_4118 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 49,744 to 50,616
_4118
Dshi_4119: Dshi_4119 - NAD-dependent epimerase/dehydratase (RefSeq), at 50,748 to 51,629
_4119
Dshi_4120: Dshi_4120 - sugar transferase (RefSeq), at 51,626 to 52,234
_4120
Dshi_4121: Dshi_4121 - glycosyl transferase family 2 (RefSeq), at 52,382 to 54,934
_4121
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 49.791 kb on + strand at 49.799 kb on - strand at 49.834 kb on + strand, within Dshi_4118 at 50.053 kb on + strand, within Dshi_4118 at 50.073 kb on - strand, within Dshi_4118 at 50.098 kb on - strand, within Dshi_4118 at 50.154 kb on - strand, within Dshi_4118 at 50.191 kb on + strand, within Dshi_4118 at 50.311 kb on + strand, within Dshi_4118 at 50.323 kb on + strand, within Dshi_4118 at 50.350 kb on + strand, within Dshi_4118 at 50.501 kb on + strand, within Dshi_4118 at 50.563 kb on - strand at 50.594 kb on + strand at 50.672 kb on + strand at 50.680 kb on - strand at 50.701 kb on - strand at 50.766 kb on + strand at 51.188 kb on + strand, within Dshi_4119 at 51.189 kb on + strand, within Dshi_4119 at 51.375 kb on + strand, within Dshi_4119 at 51.375 kb on + strand, within Dshi_4119 at 52.118 kb on + strand, within Dshi_4120 at 52.146 kb on + strand, within Dshi_4120 at 52.273 kb on + strand at 52.306 kb on - strand at 52.390 kb on + strand at 52.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 49,791 + -2.2 49,799 - -0.4 49,834 + Dshi_4118 0.10 -2.2 50,053 + Dshi_4118 0.35 -0.5 50,073 - Dshi_4118 0.38 -0.8 50,098 - Dshi_4118 0.41 +0.2 50,154 - Dshi_4118 0.47 -2.5 50,191 + Dshi_4118 0.51 -1.8 50,311 + Dshi_4118 0.65 +2.4 50,323 + Dshi_4118 0.66 -0.6 50,350 + Dshi_4118 0.69 +1.8 50,501 + Dshi_4118 0.87 -2.5 50,563 - -0.6 50,594 + -0.6 50,672 + +0.8 50,680 - -0.6 50,701 - -1.2 50,766 + -2.6 51,188 + Dshi_4119 0.50 -2.4 51,189 + Dshi_4119 0.50 -0.2 51,375 + Dshi_4119 0.71 -1.2 51,375 + Dshi_4119 0.71 -3.2 52,118 + Dshi_4120 0.81 -0.2 52,146 + Dshi_4120 0.85 +0.4 52,273 + -2.7 52,306 - -1.6 52,390 + +0.4 52,489 - -1.9
Or see this region's nucleotide sequence