Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3873 and Dshi_3874 are separated by 55 nucleotides Dshi_3874 and Dshi_3875 overlap by 4 nucleotides Dshi_3875 and Dshi_3876 are separated by 138 nucleotides
Dshi_3873: Dshi_3873 - hypothetical protein (RefSeq), at 94,097 to 94,681
_3873
Dshi_3874: Dshi_3874 - ATP-binding protein (RefSeq), at 94,737 to 95,561
_3874
Dshi_3875: Dshi_3875 - Integrase catalytic region (RefSeq), at 95,558 to 97,051
_3875
Dshi_3876: Dshi_3876 - Resolvase domain (RefSeq), at 97,190 to 97,789
_3876
Position (kb)
95
96
97
98 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 94.563 kb on - strand, within Dshi_3873 at 94.581 kb on - strand, within Dshi_3873 at 94.581 kb on - strand, within Dshi_3873 at 94.617 kb on - strand, within Dshi_3873 at 94.619 kb on + strand, within Dshi_3873 at 94.646 kb on + strand at 94.646 kb on - strand at 94.649 kb on - strand at 94.649 kb on - strand at 94.651 kb on + strand at 94.652 kb on + strand at 94.653 kb on + strand at 94.656 kb on - strand at 94.658 kb on + strand at 94.658 kb on + strand at 94.659 kb on - strand at 94.659 kb on - strand at 94.661 kb on - strand at 94.661 kb on - strand at 94.661 kb on - strand at 94.666 kb on - strand at 94.666 kb on - strand at 94.666 kb on - strand at 94.671 kb on - strand at 94.689 kb on - strand at 94.689 kb on - strand at 94.689 kb on - strand at 94.689 kb on - strand at 94.692 kb on + strand at 94.706 kb on - strand at 94.706 kb on - strand at 94.706 kb on - strand at 94.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 94,563 - Dshi_3873 0.80 +0.3 94,581 - Dshi_3873 0.83 +2.0 94,581 - Dshi_3873 0.83 -1.1 94,617 - Dshi_3873 0.89 -0.0 94,619 + Dshi_3873 0.89 +0.7 94,646 + +0.1 94,646 - +0.5 94,649 - +0.2 94,649 - -1.2 94,651 + -0.1 94,652 + -1.0 94,653 + -0.9 94,656 - -0.5 94,658 + -0.7 94,658 + +2.0 94,659 - -0.5 94,659 - -0.5 94,661 - -0.1 94,661 - -0.7 94,661 - +0.2 94,666 - +1.2 94,666 - -2.3 94,666 - -0.0 94,671 - +1.6 94,689 - +0.7 94,689 - -0.2 94,689 - +1.6 94,689 - -0.0 94,692 + -0.0 94,706 - +1.6 94,706 - -1.3 94,706 - +0.1 94,708 - +0.1
Or see this region's nucleotide sequence