Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3510

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3509 and Dshi_3510 are separated by 6 nucleotidesDshi_3510 and Dshi_3511 overlap by 4 nucleotidesDshi_3511 and Dshi_3512 are separated by 12 nucleotides Dshi_3509: Dshi_3509 - Squalene/phytoene synthase (RefSeq), at 3,689,348 to 3,690,433 _3509 Dshi_3510: Dshi_3510 - TspO and MBR like protein (RefSeq), at 3,690,440 to 3,690,922 _3510 Dshi_3511: Dshi_3511 - hypothetical protein (RefSeq), at 3,690,919 to 3,691,104 _3511 Dshi_3512: Dshi_3512 - hydroxyneurosporene synthase (RefSeq), at 3,691,117 to 3,691,875 _3512 Position (kb) 3690 3691Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3689.487 kb on + strand, within Dshi_3509at 3689.545 kb on - strand, within Dshi_3509at 3689.616 kb on - strand, within Dshi_3509at 3689.675 kb on - strand, within Dshi_3509at 3689.679 kb on + strand, within Dshi_3509at 3689.749 kb on + strand, within Dshi_3509at 3689.749 kb on + strand, within Dshi_3509at 3689.835 kb on + strand, within Dshi_3509at 3689.882 kb on - strand, within Dshi_3509at 3689.907 kb on + strand, within Dshi_3509at 3689.943 kb on + strand, within Dshi_3509at 3690.293 kb on + strand, within Dshi_3509at 3690.340 kb on - strandat 3690.409 kb on + strandat 3690.409 kb on + strandat 3690.469 kb on + strandat 3690.475 kb on - strandat 3690.489 kb on - strand, within Dshi_3510at 3690.518 kb on + strand, within Dshi_3510at 3690.560 kb on - strand, within Dshi_3510at 3690.591 kb on - strand, within Dshi_3510at 3690.727 kb on + strand, within Dshi_3510at 3690.846 kb on - strand, within Dshi_3510at 3690.917 kb on + strandat 3691.000 kb on - strand, within Dshi_3511at 3691.150 kb on + strandat 3691.184 kb on - strandat 3691.192 kb on - strandat 3691.192 kb on - strandat 3691.204 kb on - strand, within Dshi_3512at 3691.228 kb on - strand, within Dshi_3512at 3691.284 kb on + strand, within Dshi_3512at 3691.290 kb on + strand, within Dshi_3512at 3691.297 kb on - strand, within Dshi_3512at 3691.343 kb on + strand, within Dshi_3512at 3691.386 kb on - strand, within Dshi_3512at 3691.414 kb on + strand, within Dshi_3512at 3691.439 kb on - strand, within Dshi_3512at 3691.568 kb on + strand, within Dshi_3512at 3691.588 kb on + strand, within Dshi_3512at 3691.596 kb on - strand, within Dshi_3512at 3691.636 kb on - strand, within Dshi_3512at 3691.712 kb on - strand, within Dshi_3512at 3691.718 kb on - strand, within Dshi_3512at 3691.792 kb on - strand, within Dshi_3512at 3691.838 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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3,689,487 + Dshi_3509 0.13 +1.9
3,689,545 - Dshi_3509 0.18 +2.9
3,689,616 - Dshi_3509 0.25 -1.1
3,689,675 - Dshi_3509 0.30 -1.7
3,689,679 + Dshi_3509 0.30 +2.3
3,689,749 + Dshi_3509 0.37 -0.9
3,689,749 + Dshi_3509 0.37 +0.9
3,689,835 + Dshi_3509 0.45 -0.1
3,689,882 - Dshi_3509 0.49 -0.1
3,689,907 + Dshi_3509 0.51 -0.6
3,689,943 + Dshi_3509 0.55 +3.3
3,690,293 + Dshi_3509 0.87 -1.5
3,690,340 - +1.3
3,690,409 + -2.1
3,690,409 + -1.3
3,690,469 + +1.2
3,690,475 - +0.9
3,690,489 - Dshi_3510 0.10 +2.5
3,690,518 + Dshi_3510 0.16 +2.5
3,690,560 - Dshi_3510 0.25 +1.9
3,690,591 - Dshi_3510 0.31 +3.7
3,690,727 + Dshi_3510 0.59 -0.2
3,690,846 - Dshi_3510 0.84 -1.1
3,690,917 + +1.5
3,691,000 - Dshi_3511 0.44 +1.0
3,691,150 + +1.1
3,691,184 - +0.3
3,691,192 - -1.1
3,691,192 - +0.2
3,691,204 - Dshi_3512 0.11 +0.5
3,691,228 - Dshi_3512 0.15 +0.7
3,691,284 + Dshi_3512 0.22 +0.3
3,691,290 + Dshi_3512 0.23 -1.0
3,691,297 - Dshi_3512 0.24 -0.4
3,691,343 + Dshi_3512 0.30 -0.1
3,691,386 - Dshi_3512 0.35 -1.7
3,691,414 + Dshi_3512 0.39 -1.4
3,691,439 - Dshi_3512 0.42 -1.9
3,691,568 + Dshi_3512 0.59 -0.8
3,691,588 + Dshi_3512 0.62 -0.1
3,691,596 - Dshi_3512 0.63 -0.7
3,691,636 - Dshi_3512 0.68 +1.1
3,691,712 - Dshi_3512 0.78 -0.3
3,691,718 - Dshi_3512 0.79 -2.4
3,691,792 - Dshi_3512 0.89 -2.4
3,691,838 + -2.1

Or see this region's nucleotide sequence