Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3509 and Dshi_3510 are separated by 6 nucleotides Dshi_3510 and Dshi_3511 overlap by 4 nucleotides Dshi_3511 and Dshi_3512 are separated by 12 nucleotides
Dshi_3509: Dshi_3509 - Squalene/phytoene synthase (RefSeq), at 3,689,348 to 3,690,433
_3509
Dshi_3510: Dshi_3510 - TspO and MBR like protein (RefSeq), at 3,690,440 to 3,690,922
_3510
Dshi_3511: Dshi_3511 - hypothetical protein (RefSeq), at 3,690,919 to 3,691,104
_3511
Dshi_3512: Dshi_3512 - hydroxyneurosporene synthase (RefSeq), at 3,691,117 to 3,691,875
_3512
Position (kb)
3690
3691 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3689.487 kb on + strand, within Dshi_3509 at 3689.545 kb on - strand, within Dshi_3509 at 3689.616 kb on - strand, within Dshi_3509 at 3689.675 kb on - strand, within Dshi_3509 at 3689.679 kb on + strand, within Dshi_3509 at 3689.749 kb on + strand, within Dshi_3509 at 3689.749 kb on + strand, within Dshi_3509 at 3689.835 kb on + strand, within Dshi_3509 at 3689.882 kb on - strand, within Dshi_3509 at 3689.907 kb on + strand, within Dshi_3509 at 3689.943 kb on + strand, within Dshi_3509 at 3690.293 kb on + strand, within Dshi_3509 at 3690.340 kb on - strand at 3690.409 kb on + strand at 3690.409 kb on + strand at 3690.469 kb on + strand at 3690.475 kb on - strand at 3690.489 kb on - strand, within Dshi_3510 at 3690.518 kb on + strand, within Dshi_3510 at 3690.560 kb on - strand, within Dshi_3510 at 3690.591 kb on - strand, within Dshi_3510 at 3690.727 kb on + strand, within Dshi_3510 at 3690.846 kb on - strand, within Dshi_3510 at 3690.917 kb on + strand at 3691.000 kb on - strand, within Dshi_3511 at 3691.150 kb on + strand at 3691.184 kb on - strand at 3691.192 kb on - strand at 3691.192 kb on - strand at 3691.204 kb on - strand, within Dshi_3512 at 3691.228 kb on - strand, within Dshi_3512 at 3691.284 kb on + strand, within Dshi_3512 at 3691.290 kb on + strand, within Dshi_3512 at 3691.297 kb on - strand, within Dshi_3512 at 3691.343 kb on + strand, within Dshi_3512 at 3691.386 kb on - strand, within Dshi_3512 at 3691.414 kb on + strand, within Dshi_3512 at 3691.439 kb on - strand, within Dshi_3512 at 3691.568 kb on + strand, within Dshi_3512 at 3691.588 kb on + strand, within Dshi_3512 at 3691.596 kb on - strand, within Dshi_3512 at 3691.636 kb on - strand, within Dshi_3512 at 3691.712 kb on - strand, within Dshi_3512 at 3691.718 kb on - strand, within Dshi_3512 at 3691.792 kb on - strand, within Dshi_3512 at 3691.838 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 3,689,487 + Dshi_3509 0.13 +1.9 3,689,545 - Dshi_3509 0.18 +2.9 3,689,616 - Dshi_3509 0.25 -1.1 3,689,675 - Dshi_3509 0.30 -1.7 3,689,679 + Dshi_3509 0.30 +2.3 3,689,749 + Dshi_3509 0.37 -0.9 3,689,749 + Dshi_3509 0.37 +0.9 3,689,835 + Dshi_3509 0.45 -0.1 3,689,882 - Dshi_3509 0.49 -0.1 3,689,907 + Dshi_3509 0.51 -0.6 3,689,943 + Dshi_3509 0.55 +3.3 3,690,293 + Dshi_3509 0.87 -1.5 3,690,340 - +1.3 3,690,409 + -2.1 3,690,409 + -1.3 3,690,469 + +1.2 3,690,475 - +0.9 3,690,489 - Dshi_3510 0.10 +2.5 3,690,518 + Dshi_3510 0.16 +2.5 3,690,560 - Dshi_3510 0.25 +1.9 3,690,591 - Dshi_3510 0.31 +3.7 3,690,727 + Dshi_3510 0.59 -0.2 3,690,846 - Dshi_3510 0.84 -1.1 3,690,917 + +1.5 3,691,000 - Dshi_3511 0.44 +1.0 3,691,150 + +1.1 3,691,184 - +0.3 3,691,192 - -1.1 3,691,192 - +0.2 3,691,204 - Dshi_3512 0.11 +0.5 3,691,228 - Dshi_3512 0.15 +0.7 3,691,284 + Dshi_3512 0.22 +0.3 3,691,290 + Dshi_3512 0.23 -1.0 3,691,297 - Dshi_3512 0.24 -0.4 3,691,343 + Dshi_3512 0.30 -0.1 3,691,386 - Dshi_3512 0.35 -1.7 3,691,414 + Dshi_3512 0.39 -1.4 3,691,439 - Dshi_3512 0.42 -1.9 3,691,568 + Dshi_3512 0.59 -0.8 3,691,588 + Dshi_3512 0.62 -0.1 3,691,596 - Dshi_3512 0.63 -0.7 3,691,636 - Dshi_3512 0.68 +1.1 3,691,712 - Dshi_3512 0.78 -0.3 3,691,718 - Dshi_3512 0.79 -2.4 3,691,792 - Dshi_3512 0.89 -2.4 3,691,838 + -2.1
Or see this region's nucleotide sequence