Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3231 and Dshi_3232 are separated by 384 nucleotides Dshi_3232 and Dshi_3233 are separated by 3 nucleotides Dshi_3233 and Dshi_3234 overlap by 4 nucleotides
Dshi_3231: Dshi_3231 - hypothetical protein (RefSeq), at 3,399,663 to 3,401,321
_3231
Dshi_3232: Dshi_3232 - hypothetical protein (RefSeq), at 3,401,706 to 3,402,056
_3232
Dshi_3233: Dshi_3233 - NLP/P60 protein (RefSeq), at 3,402,060 to 3,402,899
_3233
Dshi_3234: Dshi_3234 - Leucyl aminopeptidase (RefSeq), at 3,402,896 to 3,404,287
_3234
Position (kb)
3401
3402
3403 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3400.732 kb on + strand, within Dshi_3231 at 3400.874 kb on + strand, within Dshi_3231 at 3400.924 kb on + strand, within Dshi_3231 at 3400.924 kb on + strand, within Dshi_3231 at 3400.924 kb on + strand, within Dshi_3231 at 3400.960 kb on + strand, within Dshi_3231 at 3401.191 kb on + strand at 3401.269 kb on - strand at 3401.269 kb on - strand at 3401.355 kb on - strand at 3401.374 kb on + strand at 3401.463 kb on + strand at 3401.594 kb on - strand at 3401.602 kb on + strand at 3401.676 kb on - strand at 3401.676 kb on - strand at 3401.739 kb on + strand at 3401.782 kb on + strand, within Dshi_3232 at 3401.790 kb on - strand, within Dshi_3232 at 3401.790 kb on - strand, within Dshi_3232 at 3401.823 kb on + strand, within Dshi_3232 at 3401.949 kb on + strand, within Dshi_3232 at 3401.995 kb on + strand, within Dshi_3232 at 3402.003 kb on - strand, within Dshi_3232 at 3402.050 kb on + strand at 3402.050 kb on + strand at 3402.071 kb on - strand at 3402.138 kb on - strand at 3402.182 kb on - strand, within Dshi_3233 at 3402.256 kb on + strand, within Dshi_3233 at 3402.485 kb on + strand, within Dshi_3233 at 3402.596 kb on - strand, within Dshi_3233 at 3402.659 kb on - strand, within Dshi_3233
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 3,400,732 + Dshi_3231 0.64 +1.5 3,400,874 + Dshi_3231 0.73 -1.9 3,400,924 + Dshi_3231 0.76 +0.1 3,400,924 + Dshi_3231 0.76 -0.9 3,400,924 + Dshi_3231 0.76 -1.1 3,400,960 + Dshi_3231 0.78 +0.4 3,401,191 + +1.1 3,401,269 - +0.7 3,401,269 - +0.1 3,401,355 - -3.1 3,401,374 + +0.1 3,401,463 + -1.5 3,401,594 - -0.9 3,401,602 + +0.1 3,401,676 - -1.5 3,401,676 - -3.5 3,401,739 + +0.1 3,401,782 + Dshi_3232 0.22 -0.5 3,401,790 - Dshi_3232 0.24 +2.1 3,401,790 - Dshi_3232 0.24 +0.1 3,401,823 + Dshi_3232 0.33 -2.3 3,401,949 + Dshi_3232 0.69 -3.4 3,401,995 + Dshi_3232 0.82 +2.1 3,402,003 - Dshi_3232 0.85 -2.8 3,402,050 + -0.6 3,402,050 + +0.1 3,402,071 - +0.5 3,402,138 - +2.4 3,402,182 - Dshi_3233 0.15 +2.7 3,402,256 + Dshi_3233 0.23 -0.5 3,402,485 + Dshi_3233 0.51 -1.9 3,402,596 - Dshi_3233 0.64 -1.2 3,402,659 - Dshi_3233 0.71 -0.9
Or see this region's nucleotide sequence