Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2837 and Dshi_2838 are separated by 79 nucleotides Dshi_2838 and Dshi_2839 are separated by 89 nucleotides Dshi_2839 and Dshi_2840 are separated by 4 nucleotides Dshi_2840 and Dshi_2841 overlap by 4 nucleotides
Dshi_2837: Dshi_2837 - aminotransferase class IV (RefSeq), at 2,995,862 to 2,996,722
_2837
Dshi_2838: Dshi_2838 - UspA domain protein (RefSeq), at 2,996,802 to 2,997,257
_2838
Dshi_2839: Dshi_2839 - Scaffold protein Nfu/NifU (RefSeq), at 2,997,347 to 2,997,910
_2839
Dshi_2840: Dshi_2840 - peptidase M22 glycoprotease (RefSeq), at 2,997,915 to 2,998,571
_2840
Dshi_2841: Dshi_2841 - ribosomal-protein-alanine acetyltransferase (RefSeq), at 2,998,568 to 2,998,987
_2841
Position (kb)
2997
2998 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2996.438 kb on - strand, within Dshi_2837 at 2996.551 kb on + strand, within Dshi_2837 at 2996.551 kb on + strand, within Dshi_2837 at 2996.851 kb on - strand, within Dshi_2838 at 2996.920 kb on - strand, within Dshi_2838 at 2996.952 kb on - strand, within Dshi_2838 at 2997.275 kb on - strand at 2998.621 kb on + strand, within Dshi_2841 at 2998.792 kb on - strand, within Dshi_2841 at 2998.821 kb on - strand, within Dshi_2841 at 2998.874 kb on + strand, within Dshi_2841 at 2998.874 kb on + strand, within Dshi_2841 at 2998.898 kb on - strand, within Dshi_2841
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,996,438 - Dshi_2837 0.67 -0.5 2,996,551 + Dshi_2837 0.80 -1.3 2,996,551 + Dshi_2837 0.80 -1.5 2,996,851 - Dshi_2838 0.11 +2.1 2,996,920 - Dshi_2838 0.26 -2.7 2,996,952 - Dshi_2838 0.33 -0.2 2,997,275 - -1.3 2,998,621 + Dshi_2841 0.13 +1.0 2,998,792 - Dshi_2841 0.53 +2.6 2,998,821 - Dshi_2841 0.60 +0.3 2,998,874 + Dshi_2841 0.73 +1.3 2,998,874 + Dshi_2841 0.73 -1.4 2,998,898 - Dshi_2841 0.79 +3.9
Or see this region's nucleotide sequence