Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2674 and Dshi_2675 are separated by 54 nucleotides Dshi_2675 and Dshi_2676 overlap by 29 nucleotides
Dshi_2674: Dshi_2674 - two component transcriptional regulator, LuxR family (RefSeq), at 2,830,905 to 2,831,591
_2674
Dshi_2675: Dshi_2675 - domain of unknown function DUF1745 (RefSeq), at 2,831,646 to 2,832,845
_2675
Dshi_2676: Dshi_2676 - histidine kinase (RefSeq), at 2,832,817 to 2,834,847
_2676
Position (kb)
2831
2832
2833 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2830.764 kb on - strand at 2830.973 kb on + strand at 2830.981 kb on - strand, within Dshi_2674 at 2831.141 kb on + strand, within Dshi_2674 at 2831.147 kb on - strand, within Dshi_2674 at 2831.289 kb on + strand, within Dshi_2674 at 2831.297 kb on - strand, within Dshi_2674 at 2831.297 kb on - strand, within Dshi_2674 at 2831.345 kb on + strand, within Dshi_2674 at 2831.359 kb on - strand, within Dshi_2674 at 2831.373 kb on - strand, within Dshi_2674 at 2831.440 kb on + strand, within Dshi_2674 at 2831.447 kb on - strand, within Dshi_2674 at 2831.516 kb on - strand, within Dshi_2674 at 2831.585 kb on + strand at 2831.849 kb on - strand, within Dshi_2675 at 2831.956 kb on + strand, within Dshi_2675 at 2832.076 kb on + strand, within Dshi_2675 at 2832.121 kb on + strand, within Dshi_2675 at 2832.124 kb on - strand, within Dshi_2675 at 2832.132 kb on + strand, within Dshi_2675 at 2832.172 kb on - strand, within Dshi_2675 at 2832.173 kb on + strand, within Dshi_2675 at 2832.252 kb on + strand, within Dshi_2675 at 2832.304 kb on + strand, within Dshi_2675 at 2832.319 kb on + strand, within Dshi_2675 at 2832.436 kb on + strand, within Dshi_2675 at 2832.528 kb on - strand, within Dshi_2675 at 2832.604 kb on - strand, within Dshi_2675 at 2832.674 kb on + strand, within Dshi_2675 at 2832.685 kb on - strand, within Dshi_2675 at 2832.797 kb on + strand at 2832.935 kb on + strand at 2832.969 kb on - strand at 2833.086 kb on - strand, within Dshi_2676 at 2833.086 kb on - strand, within Dshi_2676 at 2833.183 kb on - strand, within Dshi_2676 at 2833.223 kb on + strand, within Dshi_2676 at 2833.223 kb on + strand, within Dshi_2676 at 2833.231 kb on - strand, within Dshi_2676 at 2833.268 kb on - strand, within Dshi_2676 at 2833.376 kb on - strand, within Dshi_2676 at 2833.552 kb on + strand, within Dshi_2676 at 2833.812 kb on - strand, within Dshi_2676
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,830,764 - -0.8 2,830,973 + -2.8 2,830,981 - Dshi_2674 0.11 +0.2 2,831,141 + Dshi_2674 0.34 -1.2 2,831,147 - Dshi_2674 0.35 +0.2 2,831,289 + Dshi_2674 0.56 -0.5 2,831,297 - Dshi_2674 0.57 -1.8 2,831,297 - Dshi_2674 0.57 +0.2 2,831,345 + Dshi_2674 0.64 -0.1 2,831,359 - Dshi_2674 0.66 -1.1 2,831,373 - Dshi_2674 0.68 -0.3 2,831,440 + Dshi_2674 0.78 -1.5 2,831,447 - Dshi_2674 0.79 -2.8 2,831,516 - Dshi_2674 0.89 +1.2 2,831,585 + +1.4 2,831,849 - Dshi_2675 0.17 +0.8 2,831,956 + Dshi_2675 0.26 +2.2 2,832,076 + Dshi_2675 0.36 +0.4 2,832,121 + Dshi_2675 0.40 -1.5 2,832,124 - Dshi_2675 0.40 -0.2 2,832,132 + Dshi_2675 0.41 -0.3 2,832,172 - Dshi_2675 0.44 +1.8 2,832,173 + Dshi_2675 0.44 -0.7 2,832,252 + Dshi_2675 0.51 +2.6 2,832,304 + Dshi_2675 0.55 +2.5 2,832,319 + Dshi_2675 0.56 -0.2 2,832,436 + Dshi_2675 0.66 -0.1 2,832,528 - Dshi_2675 0.73 +0.3 2,832,604 - Dshi_2675 0.80 +1.2 2,832,674 + Dshi_2675 0.86 -1.5 2,832,685 - Dshi_2675 0.87 +0.7 2,832,797 + -1.6 2,832,935 + -2.4 2,832,969 - -0.8 2,833,086 - Dshi_2676 0.13 -2.9 2,833,086 - Dshi_2676 0.13 +0.2 2,833,183 - Dshi_2676 0.18 -3.2 2,833,223 + Dshi_2676 0.20 -1.1 2,833,223 + Dshi_2676 0.20 -0.7 2,833,231 - Dshi_2676 0.20 -1.8 2,833,268 - Dshi_2676 0.22 +1.2 2,833,376 - Dshi_2676 0.28 -0.5 2,833,552 + Dshi_2676 0.36 -0.8 2,833,812 - Dshi_2676 0.49 +1.1
Or see this region's nucleotide sequence