Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2675

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2674 and Dshi_2675 are separated by 54 nucleotidesDshi_2675 and Dshi_2676 overlap by 29 nucleotides Dshi_2674: Dshi_2674 - two component transcriptional regulator, LuxR family (RefSeq), at 2,830,905 to 2,831,591 _2674 Dshi_2675: Dshi_2675 - domain of unknown function DUF1745 (RefSeq), at 2,831,646 to 2,832,845 _2675 Dshi_2676: Dshi_2676 - histidine kinase (RefSeq), at 2,832,817 to 2,834,847 _2676 Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2830.764 kb on - strandat 2830.973 kb on + strandat 2830.981 kb on - strand, within Dshi_2674at 2831.141 kb on + strand, within Dshi_2674at 2831.147 kb on - strand, within Dshi_2674at 2831.289 kb on + strand, within Dshi_2674at 2831.297 kb on - strand, within Dshi_2674at 2831.297 kb on - strand, within Dshi_2674at 2831.345 kb on + strand, within Dshi_2674at 2831.359 kb on - strand, within Dshi_2674at 2831.373 kb on - strand, within Dshi_2674at 2831.440 kb on + strand, within Dshi_2674at 2831.447 kb on - strand, within Dshi_2674at 2831.516 kb on - strand, within Dshi_2674at 2831.585 kb on + strandat 2831.849 kb on - strand, within Dshi_2675at 2831.956 kb on + strand, within Dshi_2675at 2832.076 kb on + strand, within Dshi_2675at 2832.121 kb on + strand, within Dshi_2675at 2832.124 kb on - strand, within Dshi_2675at 2832.132 kb on + strand, within Dshi_2675at 2832.172 kb on - strand, within Dshi_2675at 2832.173 kb on + strand, within Dshi_2675at 2832.252 kb on + strand, within Dshi_2675at 2832.304 kb on + strand, within Dshi_2675at 2832.319 kb on + strand, within Dshi_2675at 2832.436 kb on + strand, within Dshi_2675at 2832.528 kb on - strand, within Dshi_2675at 2832.604 kb on - strand, within Dshi_2675at 2832.674 kb on + strand, within Dshi_2675at 2832.685 kb on - strand, within Dshi_2675at 2832.797 kb on + strandat 2832.935 kb on + strandat 2832.969 kb on - strandat 2833.086 kb on - strand, within Dshi_2676at 2833.086 kb on - strand, within Dshi_2676at 2833.183 kb on - strand, within Dshi_2676at 2833.223 kb on + strand, within Dshi_2676at 2833.223 kb on + strand, within Dshi_2676at 2833.231 kb on - strand, within Dshi_2676at 2833.268 kb on - strand, within Dshi_2676at 2833.376 kb on - strand, within Dshi_2676at 2833.552 kb on + strand, within Dshi_2676at 2833.812 kb on - strand, within Dshi_2676

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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2,830,764 - -0.8
2,830,973 + -2.8
2,830,981 - Dshi_2674 0.11 +0.2
2,831,141 + Dshi_2674 0.34 -1.2
2,831,147 - Dshi_2674 0.35 +0.2
2,831,289 + Dshi_2674 0.56 -0.5
2,831,297 - Dshi_2674 0.57 -1.8
2,831,297 - Dshi_2674 0.57 +0.2
2,831,345 + Dshi_2674 0.64 -0.1
2,831,359 - Dshi_2674 0.66 -1.1
2,831,373 - Dshi_2674 0.68 -0.3
2,831,440 + Dshi_2674 0.78 -1.5
2,831,447 - Dshi_2674 0.79 -2.8
2,831,516 - Dshi_2674 0.89 +1.2
2,831,585 + +1.4
2,831,849 - Dshi_2675 0.17 +0.8
2,831,956 + Dshi_2675 0.26 +2.2
2,832,076 + Dshi_2675 0.36 +0.4
2,832,121 + Dshi_2675 0.40 -1.5
2,832,124 - Dshi_2675 0.40 -0.2
2,832,132 + Dshi_2675 0.41 -0.3
2,832,172 - Dshi_2675 0.44 +1.8
2,832,173 + Dshi_2675 0.44 -0.7
2,832,252 + Dshi_2675 0.51 +2.6
2,832,304 + Dshi_2675 0.55 +2.5
2,832,319 + Dshi_2675 0.56 -0.2
2,832,436 + Dshi_2675 0.66 -0.1
2,832,528 - Dshi_2675 0.73 +0.3
2,832,604 - Dshi_2675 0.80 +1.2
2,832,674 + Dshi_2675 0.86 -1.5
2,832,685 - Dshi_2675 0.87 +0.7
2,832,797 + -1.6
2,832,935 + -2.4
2,832,969 - -0.8
2,833,086 - Dshi_2676 0.13 -2.9
2,833,086 - Dshi_2676 0.13 +0.2
2,833,183 - Dshi_2676 0.18 -3.2
2,833,223 + Dshi_2676 0.20 -1.1
2,833,223 + Dshi_2676 0.20 -0.7
2,833,231 - Dshi_2676 0.20 -1.8
2,833,268 - Dshi_2676 0.22 +1.2
2,833,376 - Dshi_2676 0.28 -0.5
2,833,552 + Dshi_2676 0.36 -0.8
2,833,812 - Dshi_2676 0.49 +1.1

Or see this region's nucleotide sequence