Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2627

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2626 and Dshi_2627 are separated by 1 nucleotidesDshi_2627 and Dshi_2628 overlap by 4 nucleotidesDshi_2628 and Dshi_2629 are separated by 27 nucleotides Dshi_2626: Dshi_2626 - major facilitator superfamily MFS_1 (RefSeq), at 2,784,148 to 2,785,326 _2626 Dshi_2627: Dshi_2627 - nitroreductase (RefSeq), at 2,785,328 to 2,785,978 _2627 Dshi_2628: Dshi_2628 - hypothetical protein (RefSeq), at 2,785,975 to 2,786,685 _2628 Dshi_2629: Dshi_2629 - protein of unknown function DUF1467 (RefSeq), at 2,786,713 to 2,787,000 _2629 Position (kb) 2785 2786Strain fitness (log2 ratio) -2 -1 0 1 2at 2784.698 kb on - strand, within Dshi_2626at 2784.702 kb on - strand, within Dshi_2626at 2784.744 kb on + strand, within Dshi_2626at 2785.228 kb on - strandat 2785.391 kb on - strandat 2785.493 kb on + strand, within Dshi_2627at 2785.580 kb on + strand, within Dshi_2627at 2785.588 kb on - strand, within Dshi_2627at 2785.603 kb on + strand, within Dshi_2627at 2785.821 kb on + strand, within Dshi_2627at 2785.931 kb on - strandat 2786.043 kb on + strandat 2786.375 kb on - strand, within Dshi_2628at 2786.455 kb on + strand, within Dshi_2628at 2786.665 kb on - strandat 2786.743 kb on - strand, within Dshi_2629

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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2,784,698 - Dshi_2626 0.47 +1.7
2,784,702 - Dshi_2626 0.47 -2.2
2,784,744 + Dshi_2626 0.51 -0.5
2,785,228 - -0.4
2,785,391 - +0.5
2,785,493 + Dshi_2627 0.25 +0.1
2,785,580 + Dshi_2627 0.39 -1.4
2,785,588 - Dshi_2627 0.40 -0.3
2,785,603 + Dshi_2627 0.42 -1.1
2,785,821 + Dshi_2627 0.76 +1.7
2,785,931 - -1.9
2,786,043 + +0.7
2,786,375 - Dshi_2628 0.56 +2.3
2,786,455 + Dshi_2628 0.68 +2.1
2,786,665 - -1.4
2,786,743 - Dshi_2629 0.10 +1.3

Or see this region's nucleotide sequence