Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2603 and Dshi_2604 are separated by 84 nucleotides Dshi_2604 and Dshi_2605 are separated by 12 nucleotides Dshi_2605 and Dshi_2606 are separated by 65 nucleotides Dshi_2606 and Dshi_2607 are separated by 119 nucleotides Dshi_2607 and Dshi_2608 are separated by 217 nucleotides
Dshi_2603: Dshi_2603 - oligoendopeptidase, pepF/M3 family (RefSeq), at 2,767,996 to 2,769,831
_2603
Dshi_2604: Dshi_2604 - protein of unknown function DUF805 (RefSeq), at 2,769,916 to 2,770,317
_2604
Dshi_2605: Dshi_2605 - hypothetical protein (RefSeq), at 2,770,330 to 2,770,554
_2605
Dshi_2606: Dshi_2606 - zinc finger CDGSH-type domain protein (RefSeq), at 2,770,620 to 2,770,862
_2606
Dshi_2607: Dshi_2607 - hypothetical protein (RefSeq), at 2,770,982 to 2,771,284
_2607
Dshi_2608: Dshi_2608 - oxidoreductase domain protein (RefSeq), at 2,771,502 to 2,772,488
_2608
Position (kb)
2770
2771 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2769.707 kb on + strand at 2769.715 kb on - strand at 2769.717 kb on + strand at 2769.745 kb on - strand at 2769.760 kb on - strand at 2769.804 kb on - strand at 2769.822 kb on + strand at 2769.944 kb on - strand at 2770.029 kb on + strand, within Dshi_2604 at 2770.350 kb on + strand at 2770.363 kb on - strand, within Dshi_2605 at 2770.445 kb on - strand, within Dshi_2605 at 2770.470 kb on - strand, within Dshi_2605 at 2770.507 kb on + strand, within Dshi_2605 at 2770.617 kb on - strand at 2770.645 kb on - strand, within Dshi_2606 at 2770.740 kb on - strand, within Dshi_2606 at 2770.796 kb on - strand, within Dshi_2606 at 2770.902 kb on - strand at 2770.956 kb on + strand at 2770.958 kb on + strand at 2770.980 kb on + strand at 2770.980 kb on + strand at 2770.988 kb on - strand at 2770.988 kb on - strand at 2771.001 kb on + strand at 2771.156 kb on + strand, within Dshi_2607 at 2771.183 kb on + strand, within Dshi_2607 at 2771.193 kb on + strand, within Dshi_2607 at 2771.223 kb on + strand, within Dshi_2607 at 2771.255 kb on - strand at 2771.287 kb on + strand at 2771.290 kb on - strand at 2771.305 kb on - strand at 2771.323 kb on + strand at 2771.354 kb on - strand at 2771.396 kb on - strand at 2771.407 kb on - strand at 2771.442 kb on - strand at 2771.484 kb on + strand at 2771.499 kb on + strand at 2771.508 kb on - strand at 2771.540 kb on - strand at 2771.685 kb on - strand, within Dshi_2608 at 2771.691 kb on - strand, within Dshi_2608 at 2771.808 kb on - strand, within Dshi_2608
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,769,707 + -0.7 2,769,715 - -1.1 2,769,717 + +0.2 2,769,745 - -1.0 2,769,760 - +0.5 2,769,804 - -0.6 2,769,822 + -1.0 2,769,944 - -0.8 2,770,029 + Dshi_2604 0.28 +0.1 2,770,350 + +2.9 2,770,363 - Dshi_2605 0.15 -0.5 2,770,445 - Dshi_2605 0.51 +0.4 2,770,470 - Dshi_2605 0.62 -0.1 2,770,507 + Dshi_2605 0.79 -0.9 2,770,617 - -0.9 2,770,645 - Dshi_2606 0.10 -0.3 2,770,740 - Dshi_2606 0.49 -1.8 2,770,796 - Dshi_2606 0.72 -2.1 2,770,902 - -0.9 2,770,956 + -0.4 2,770,958 + -0.9 2,770,980 + -0.0 2,770,980 + -0.3 2,770,988 - +2.1 2,770,988 - -0.7 2,771,001 + -1.5 2,771,156 + Dshi_2607 0.57 +1.1 2,771,183 + Dshi_2607 0.66 -1.4 2,771,193 + Dshi_2607 0.70 +0.4 2,771,223 + Dshi_2607 0.80 -2.7 2,771,255 - -0.1 2,771,287 + -0.7 2,771,290 - -1.2 2,771,305 - -0.1 2,771,323 + -1.9 2,771,354 - +0.8 2,771,396 - +0.7 2,771,407 - -1.5 2,771,442 - +0.1 2,771,484 + -0.1 2,771,499 + -1.6 2,771,508 - -0.7 2,771,540 - -0.7 2,771,685 - Dshi_2608 0.19 +0.4 2,771,691 - Dshi_2608 0.19 +0.0 2,771,808 - Dshi_2608 0.31 +1.3
Or see this region's nucleotide sequence