Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2570

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2569 and Dshi_2570 overlap by 4 nucleotidesDshi_2570 and Dshi_6045 are separated by 154 nucleotidesDshi_6045 and Dshi_2571 are separated by 118 nucleotides Dshi_2569: Dshi_2569 - putative ammonia monooxygenase (RefSeq), at 2,736,718 to 2,737,746 _2569 Dshi_2570: Dshi_2570 - transcriptional regulator, GntR family (RefSeq), at 2,737,743 to 2,738,384 _2570 Dshi_6045: Dshi_6045 - tRNA-Tyr (NCBI), at 2,738,539 to 2,738,622 _6045 Dshi_2571: Dshi_2571 - RNA methyltransferase, TrmH family, group 3 (RefSeq), at 2,738,741 to 2,739,532 _2571 Position (kb) 2737 2738 2739Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2736.789 kb on + strandat 2736.811 kb on + strandat 2736.819 kb on - strandat 2736.905 kb on - strand, within Dshi_2569at 2737.092 kb on - strand, within Dshi_2569at 2737.155 kb on - strand, within Dshi_2569at 2737.260 kb on - strand, within Dshi_2569at 2737.273 kb on - strand, within Dshi_2569at 2737.282 kb on - strand, within Dshi_2569at 2737.340 kb on - strand, within Dshi_2569at 2737.383 kb on + strand, within Dshi_2569at 2737.391 kb on - strand, within Dshi_2569at 2737.423 kb on - strand, within Dshi_2569at 2737.434 kb on + strand, within Dshi_2569at 2737.447 kb on + strand, within Dshi_2569at 2737.457 kb on + strand, within Dshi_2569at 2737.465 kb on - strand, within Dshi_2569at 2737.511 kb on - strand, within Dshi_2569at 2737.567 kb on + strand, within Dshi_2569at 2737.599 kb on + strand, within Dshi_2569at 2737.659 kb on - strandat 2737.664 kb on + strandat 2737.672 kb on - strandat 2737.797 kb on - strandat 2737.851 kb on + strand, within Dshi_2570at 2737.861 kb on + strand, within Dshi_2570at 2737.876 kb on + strand, within Dshi_2570at 2737.921 kb on - strand, within Dshi_2570at 2738.011 kb on + strand, within Dshi_2570at 2738.019 kb on - strand, within Dshi_2570at 2738.024 kb on - strand, within Dshi_2570at 2738.030 kb on + strand, within Dshi_2570at 2738.043 kb on - strand, within Dshi_2570at 2738.043 kb on - strand, within Dshi_2570at 2738.212 kb on + strand, within Dshi_2570at 2738.218 kb on + strand, within Dshi_2570at 2738.310 kb on + strand, within Dshi_2570at 2738.329 kb on + strandat 2738.406 kb on + strandat 2738.677 kb on + strandat 2738.677 kb on + strandat 2738.685 kb on - strandat 2738.685 kb on - strandat 2738.787 kb on + strandat 2738.801 kb on + strandat 2738.801 kb on + strandat 2739.025 kb on + strand, within Dshi_2571at 2739.055 kb on + strand, within Dshi_2571at 2739.058 kb on - strand, within Dshi_2571at 2739.216 kb on - strand, within Dshi_2571at 2739.284 kb on - strand, within Dshi_2571at 2739.342 kb on + strand, within Dshi_2571

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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2,736,789 + +1.8
2,736,811 + -0.3
2,736,819 - +3.1
2,736,905 - Dshi_2569 0.18 +0.1
2,737,092 - Dshi_2569 0.36 -1.9
2,737,155 - Dshi_2569 0.42 -0.9
2,737,260 - Dshi_2569 0.53 +0.1
2,737,273 - Dshi_2569 0.54 -2.7
2,737,282 - Dshi_2569 0.55 -0.1
2,737,340 - Dshi_2569 0.60 +0.6
2,737,383 + Dshi_2569 0.65 -0.1
2,737,391 - Dshi_2569 0.65 -1.6
2,737,423 - Dshi_2569 0.69 +2.2
2,737,434 + Dshi_2569 0.70 -0.9
2,737,447 + Dshi_2569 0.71 -0.6
2,737,457 + Dshi_2569 0.72 -2.4
2,737,465 - Dshi_2569 0.73 +0.6
2,737,511 - Dshi_2569 0.77 -0.6
2,737,567 + Dshi_2569 0.83 -0.2
2,737,599 + Dshi_2569 0.86 +1.1
2,737,659 - -0.9
2,737,664 + -1.9
2,737,672 - -1.0
2,737,797 - -1.2
2,737,851 + Dshi_2570 0.17 +1.3
2,737,861 + Dshi_2570 0.18 -1.1
2,737,876 + Dshi_2570 0.21 -1.6
2,737,921 - Dshi_2570 0.28 +1.7
2,738,011 + Dshi_2570 0.42 +0.1
2,738,019 - Dshi_2570 0.43 +0.8
2,738,024 - Dshi_2570 0.44 +0.2
2,738,030 + Dshi_2570 0.45 -0.9
2,738,043 - Dshi_2570 0.47 +3.1
2,738,043 - Dshi_2570 0.47 -0.4
2,738,212 + Dshi_2570 0.73 +1.7
2,738,218 + Dshi_2570 0.74 +0.6
2,738,310 + Dshi_2570 0.88 -0.3
2,738,329 + -1.0
2,738,406 + -0.4
2,738,677 + -0.1
2,738,677 + +1.7
2,738,685 - +2.1
2,738,685 - -0.9
2,738,787 + -0.6
2,738,801 + +0.1
2,738,801 + +0.1
2,739,025 + Dshi_2571 0.36 +0.6
2,739,055 + Dshi_2571 0.40 -2.2
2,739,058 - Dshi_2571 0.40 -0.4
2,739,216 - Dshi_2571 0.60 -0.3
2,739,284 - Dshi_2571 0.69 +0.1
2,739,342 + Dshi_2571 0.76 +2.5

Or see this region's nucleotide sequence