Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2569 and Dshi_2570 overlap by 4 nucleotides Dshi_2570 and Dshi_6045 are separated by 154 nucleotides Dshi_6045 and Dshi_2571 are separated by 118 nucleotides
Dshi_2569: Dshi_2569 - putative ammonia monooxygenase (RefSeq), at 2,736,718 to 2,737,746
_2569
Dshi_2570: Dshi_2570 - transcriptional regulator, GntR family (RefSeq), at 2,737,743 to 2,738,384
_2570
Dshi_6045: Dshi_6045 - tRNA-Tyr (NCBI), at 2,738,539 to 2,738,622
_6045
Dshi_2571: Dshi_2571 - RNA methyltransferase, TrmH family, group 3 (RefSeq), at 2,738,741 to 2,739,532
_2571
Position (kb)
2737
2738
2739 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2736.789 kb on + strand at 2736.811 kb on + strand at 2736.819 kb on - strand at 2736.905 kb on - strand, within Dshi_2569 at 2737.092 kb on - strand, within Dshi_2569 at 2737.155 kb on - strand, within Dshi_2569 at 2737.260 kb on - strand, within Dshi_2569 at 2737.273 kb on - strand, within Dshi_2569 at 2737.282 kb on - strand, within Dshi_2569 at 2737.340 kb on - strand, within Dshi_2569 at 2737.383 kb on + strand, within Dshi_2569 at 2737.391 kb on - strand, within Dshi_2569 at 2737.423 kb on - strand, within Dshi_2569 at 2737.434 kb on + strand, within Dshi_2569 at 2737.447 kb on + strand, within Dshi_2569 at 2737.457 kb on + strand, within Dshi_2569 at 2737.465 kb on - strand, within Dshi_2569 at 2737.511 kb on - strand, within Dshi_2569 at 2737.567 kb on + strand, within Dshi_2569 at 2737.599 kb on + strand, within Dshi_2569 at 2737.659 kb on - strand at 2737.664 kb on + strand at 2737.672 kb on - strand at 2737.797 kb on - strand at 2737.851 kb on + strand, within Dshi_2570 at 2737.861 kb on + strand, within Dshi_2570 at 2737.876 kb on + strand, within Dshi_2570 at 2737.921 kb on - strand, within Dshi_2570 at 2738.011 kb on + strand, within Dshi_2570 at 2738.019 kb on - strand, within Dshi_2570 at 2738.024 kb on - strand, within Dshi_2570 at 2738.030 kb on + strand, within Dshi_2570 at 2738.043 kb on - strand, within Dshi_2570 at 2738.043 kb on - strand, within Dshi_2570 at 2738.212 kb on + strand, within Dshi_2570 at 2738.218 kb on + strand, within Dshi_2570 at 2738.310 kb on + strand, within Dshi_2570 at 2738.329 kb on + strand at 2738.406 kb on + strand at 2738.677 kb on + strand at 2738.677 kb on + strand at 2738.685 kb on - strand at 2738.685 kb on - strand at 2738.787 kb on + strand at 2738.801 kb on + strand at 2738.801 kb on + strand at 2739.025 kb on + strand, within Dshi_2571 at 2739.055 kb on + strand, within Dshi_2571 at 2739.058 kb on - strand, within Dshi_2571 at 2739.216 kb on - strand, within Dshi_2571 at 2739.284 kb on - strand, within Dshi_2571 at 2739.342 kb on + strand, within Dshi_2571
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,736,789 + +1.8 2,736,811 + -0.3 2,736,819 - +3.1 2,736,905 - Dshi_2569 0.18 +0.1 2,737,092 - Dshi_2569 0.36 -1.9 2,737,155 - Dshi_2569 0.42 -0.9 2,737,260 - Dshi_2569 0.53 +0.1 2,737,273 - Dshi_2569 0.54 -2.7 2,737,282 - Dshi_2569 0.55 -0.1 2,737,340 - Dshi_2569 0.60 +0.6 2,737,383 + Dshi_2569 0.65 -0.1 2,737,391 - Dshi_2569 0.65 -1.6 2,737,423 - Dshi_2569 0.69 +2.2 2,737,434 + Dshi_2569 0.70 -0.9 2,737,447 + Dshi_2569 0.71 -0.6 2,737,457 + Dshi_2569 0.72 -2.4 2,737,465 - Dshi_2569 0.73 +0.6 2,737,511 - Dshi_2569 0.77 -0.6 2,737,567 + Dshi_2569 0.83 -0.2 2,737,599 + Dshi_2569 0.86 +1.1 2,737,659 - -0.9 2,737,664 + -1.9 2,737,672 - -1.0 2,737,797 - -1.2 2,737,851 + Dshi_2570 0.17 +1.3 2,737,861 + Dshi_2570 0.18 -1.1 2,737,876 + Dshi_2570 0.21 -1.6 2,737,921 - Dshi_2570 0.28 +1.7 2,738,011 + Dshi_2570 0.42 +0.1 2,738,019 - Dshi_2570 0.43 +0.8 2,738,024 - Dshi_2570 0.44 +0.2 2,738,030 + Dshi_2570 0.45 -0.9 2,738,043 - Dshi_2570 0.47 +3.1 2,738,043 - Dshi_2570 0.47 -0.4 2,738,212 + Dshi_2570 0.73 +1.7 2,738,218 + Dshi_2570 0.74 +0.6 2,738,310 + Dshi_2570 0.88 -0.3 2,738,329 + -1.0 2,738,406 + -0.4 2,738,677 + -0.1 2,738,677 + +1.7 2,738,685 - +2.1 2,738,685 - -0.9 2,738,787 + -0.6 2,738,801 + +0.1 2,738,801 + +0.1 2,739,025 + Dshi_2571 0.36 +0.6 2,739,055 + Dshi_2571 0.40 -2.2 2,739,058 - Dshi_2571 0.40 -0.4 2,739,216 - Dshi_2571 0.60 -0.3 2,739,284 - Dshi_2571 0.69 +0.1 2,739,342 + Dshi_2571 0.76 +2.5
Or see this region's nucleotide sequence