Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2544

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2543 and Dshi_2544 overlap by 1 nucleotidesDshi_2544 and Dshi_2545 overlap by 4 nucleotidesDshi_2545 and Dshi_2546 overlap by 8 nucleotides Dshi_2543: Dshi_2543 - NMT1/THI5 like domain protein (RefSeq), at 2,699,475 to 2,700,533 _2543 Dshi_2544: Dshi_2544 - ABC transporter related (RefSeq), at 2,700,533 to 2,701,342 _2544 Dshi_2545: Dshi_2545 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,701,339 to 2,702,202 _2545 Dshi_2546: Dshi_2546 - Malate/L-lactate dehydrogenase (RefSeq), at 2,702,195 to 2,703,250 _2546 Position (kb) 2700 2701 2702Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2699.618 kb on + strand, within Dshi_2543at 2699.618 kb on + strand, within Dshi_2543at 2699.618 kb on + strand, within Dshi_2543at 2699.626 kb on - strand, within Dshi_2543at 2699.626 kb on - strand, within Dshi_2543at 2699.633 kb on + strand, within Dshi_2543at 2699.659 kb on + strand, within Dshi_2543at 2699.688 kb on + strand, within Dshi_2543at 2699.820 kb on + strand, within Dshi_2543at 2699.874 kb on + strand, within Dshi_2543at 2699.974 kb on + strand, within Dshi_2543at 2700.142 kb on + strand, within Dshi_2543at 2700.209 kb on + strand, within Dshi_2543at 2700.216 kb on + strand, within Dshi_2543at 2700.216 kb on + strand, within Dshi_2543at 2700.240 kb on + strand, within Dshi_2543at 2700.248 kb on - strand, within Dshi_2543at 2700.321 kb on - strand, within Dshi_2543at 2700.328 kb on - strand, within Dshi_2543at 2700.344 kb on + strand, within Dshi_2543at 2700.344 kb on + strand, within Dshi_2543at 2700.362 kb on - strand, within Dshi_2543at 2700.398 kb on - strand, within Dshi_2543at 2700.398 kb on - strand, within Dshi_2543at 2700.409 kb on - strand, within Dshi_2543at 2700.413 kb on + strand, within Dshi_2543at 2700.448 kb on - strandat 2700.463 kb on + strandat 2700.473 kb on - strandat 2700.605 kb on + strandat 2700.651 kb on + strand, within Dshi_2544at 2700.661 kb on + strand, within Dshi_2544at 2700.661 kb on + strand, within Dshi_2544at 2700.679 kb on - strand, within Dshi_2544at 2700.680 kb on - strand, within Dshi_2544at 2700.743 kb on - strand, within Dshi_2544at 2700.743 kb on - strand, within Dshi_2544at 2700.747 kb on + strand, within Dshi_2544at 2700.748 kb on - strand, within Dshi_2544at 2700.755 kb on - strand, within Dshi_2544at 2700.852 kb on - strand, within Dshi_2544at 2700.921 kb on + strand, within Dshi_2544at 2700.929 kb on - strand, within Dshi_2544at 2700.929 kb on - strand, within Dshi_2544at 2700.964 kb on + strand, within Dshi_2544at 2700.964 kb on + strand, within Dshi_2544at 2700.972 kb on - strand, within Dshi_2544at 2701.004 kb on + strand, within Dshi_2544at 2701.022 kb on - strand, within Dshi_2544at 2701.098 kb on - strand, within Dshi_2544at 2701.124 kb on + strand, within Dshi_2544at 2701.170 kb on + strand, within Dshi_2544at 2701.174 kb on + strand, within Dshi_2544at 2701.178 kb on - strand, within Dshi_2544at 2701.206 kb on - strand, within Dshi_2544at 2701.241 kb on + strand, within Dshi_2544at 2701.241 kb on + strand, within Dshi_2544at 2701.249 kb on - strand, within Dshi_2544at 2701.328 kb on + strandat 2701.336 kb on + strandat 2701.361 kb on + strandat 2701.402 kb on + strandat 2701.433 kb on + strand, within Dshi_2545at 2701.535 kb on + strand, within Dshi_2545at 2701.551 kb on - strand, within Dshi_2545at 2701.567 kb on - strand, within Dshi_2545at 2701.577 kb on - strand, within Dshi_2545at 2701.579 kb on + strand, within Dshi_2545at 2701.597 kb on + strand, within Dshi_2545at 2701.684 kb on + strand, within Dshi_2545at 2701.715 kb on - strand, within Dshi_2545at 2701.742 kb on - strand, within Dshi_2545at 2701.745 kb on + strand, within Dshi_2545at 2701.788 kb on + strand, within Dshi_2545at 2701.892 kb on - strand, within Dshi_2545at 2701.912 kb on - strand, within Dshi_2545at 2701.925 kb on + strand, within Dshi_2545at 2702.067 kb on + strand, within Dshi_2545at 2702.085 kb on - strand, within Dshi_2545at 2702.120 kb on - strandat 2702.154 kb on - strandat 2702.340 kb on + strand, within Dshi_2546

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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2,699,618 + Dshi_2543 0.14 -0.6
2,699,618 + Dshi_2543 0.14 +0.9
2,699,618 + Dshi_2543 0.14 -1.3
2,699,626 - Dshi_2543 0.14 +0.1
2,699,626 - Dshi_2543 0.14 -1.4
2,699,633 + Dshi_2543 0.15 +0.2
2,699,659 + Dshi_2543 0.17 -0.0
2,699,688 + Dshi_2543 0.20 -0.3
2,699,820 + Dshi_2543 0.33 -0.1
2,699,874 + Dshi_2543 0.38 +3.1
2,699,974 + Dshi_2543 0.47 -0.7
2,700,142 + Dshi_2543 0.63 +3.1
2,700,209 + Dshi_2543 0.69 -0.5
2,700,216 + Dshi_2543 0.70 +0.5
2,700,216 + Dshi_2543 0.70 +1.9
2,700,240 + Dshi_2543 0.72 -0.3
2,700,248 - Dshi_2543 0.73 -0.2
2,700,321 - Dshi_2543 0.80 +3.1
2,700,328 - Dshi_2543 0.81 +1.5
2,700,344 + Dshi_2543 0.82 +0.6
2,700,344 + Dshi_2543 0.82 -0.2
2,700,362 - Dshi_2543 0.84 +2.0
2,700,398 - Dshi_2543 0.87 +2.1
2,700,398 - Dshi_2543 0.87 -0.9
2,700,409 - Dshi_2543 0.88 -0.7
2,700,413 + Dshi_2543 0.89 -0.0
2,700,448 - +0.0
2,700,463 + +0.8
2,700,473 - +1.0
2,700,605 + +0.7
2,700,651 + Dshi_2544 0.15 +0.7
2,700,661 + Dshi_2544 0.16 +0.6
2,700,661 + Dshi_2544 0.16 +1.5
2,700,679 - Dshi_2544 0.18 +2.1
2,700,680 - Dshi_2544 0.18 -0.1
2,700,743 - Dshi_2544 0.26 -0.0
2,700,743 - Dshi_2544 0.26 +1.5
2,700,747 + Dshi_2544 0.26 +1.7
2,700,748 - Dshi_2544 0.27 -2.9
2,700,755 - Dshi_2544 0.27 +0.0
2,700,852 - Dshi_2544 0.39 +1.0
2,700,921 + Dshi_2544 0.48 -0.6
2,700,929 - Dshi_2544 0.49 -0.7
2,700,929 - Dshi_2544 0.49 -0.9
2,700,964 + Dshi_2544 0.53 +0.2
2,700,964 + Dshi_2544 0.53 +0.4
2,700,972 - Dshi_2544 0.54 -0.3
2,701,004 + Dshi_2544 0.58 -0.6
2,701,022 - Dshi_2544 0.60 -0.8
2,701,098 - Dshi_2544 0.70 -0.8
2,701,124 + Dshi_2544 0.73 -0.1
2,701,170 + Dshi_2544 0.79 -1.3
2,701,174 + Dshi_2544 0.79 +0.4
2,701,178 - Dshi_2544 0.80 -0.8
2,701,206 - Dshi_2544 0.83 -0.5
2,701,241 + Dshi_2544 0.87 -0.4
2,701,241 + Dshi_2544 0.87 +0.1
2,701,249 - Dshi_2544 0.88 -0.7
2,701,328 + -0.1
2,701,336 + -0.3
2,701,361 + +0.5
2,701,402 + -2.6
2,701,433 + Dshi_2545 0.11 +0.9
2,701,535 + Dshi_2545 0.23 +0.5
2,701,551 - Dshi_2545 0.25 +0.1
2,701,567 - Dshi_2545 0.26 -0.5
2,701,577 - Dshi_2545 0.28 +0.6
2,701,579 + Dshi_2545 0.28 -0.0
2,701,597 + Dshi_2545 0.30 -0.9
2,701,684 + Dshi_2545 0.40 +2.0
2,701,715 - Dshi_2545 0.44 -0.6
2,701,742 - Dshi_2545 0.47 +0.2
2,701,745 + Dshi_2545 0.47 +0.6
2,701,788 + Dshi_2545 0.52 -0.2
2,701,892 - Dshi_2545 0.64 -0.3
2,701,912 - Dshi_2545 0.66 -0.6
2,701,925 + Dshi_2545 0.68 +3.6
2,702,067 + Dshi_2545 0.84 -1.4
2,702,085 - Dshi_2545 0.86 -0.5
2,702,120 - +1.7
2,702,154 - +0.8
2,702,340 + Dshi_2546 0.14 +0.5

Or see this region's nucleotide sequence