Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2343 and Dshi_2344 are separated by 208 nucleotides Dshi_2344 and Dshi_2345 overlap by 4 nucleotides Dshi_2345 and Dshi_2346 are separated by 226 nucleotides
Dshi_2343: Dshi_2343 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,475,833 to 2,476,918
_2343
Dshi_2344: Dshi_2344 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,477,127 to 2,478,569
_2344
Dshi_2345: Dshi_2345 - two component transcriptional regulator, LuxR family (RefSeq), at 2,478,566 to 2,479,228
_2345
Dshi_2346: Dshi_2346 - queuine tRNA-ribosyltransferase (RefSeq), at 2,479,455 to 2,480,585
_2346
Position (kb)
2477
2478
2479 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2476.159 kb on + strand, within Dshi_2343 at 2476.202 kb on - strand, within Dshi_2343 at 2476.222 kb on - strand, within Dshi_2343 at 2476.273 kb on + strand, within Dshi_2343 at 2476.281 kb on - strand, within Dshi_2343 at 2476.282 kb on - strand, within Dshi_2343 at 2476.293 kb on + strand, within Dshi_2343 at 2476.414 kb on - strand, within Dshi_2343 at 2476.514 kb on + strand, within Dshi_2343 at 2476.522 kb on - strand, within Dshi_2343 at 2476.522 kb on - strand, within Dshi_2343 at 2476.558 kb on - strand, within Dshi_2343 at 2476.564 kb on + strand, within Dshi_2343 at 2476.595 kb on + strand, within Dshi_2343 at 2476.606 kb on + strand, within Dshi_2343 at 2476.614 kb on + strand, within Dshi_2343 at 2476.622 kb on - strand, within Dshi_2343 at 2476.651 kb on - strand, within Dshi_2343 at 2476.672 kb on + strand, within Dshi_2343 at 2476.690 kb on + strand, within Dshi_2343 at 2476.780 kb on - strand, within Dshi_2343 at 2476.816 kb on + strand at 2476.821 kb on + strand at 2476.824 kb on - strand at 2476.860 kb on - strand at 2476.860 kb on - strand at 2476.875 kb on + strand at 2476.875 kb on + strand at 2476.883 kb on - strand at 2476.883 kb on - strand at 2476.883 kb on - strand at 2476.885 kb on + strand at 2476.885 kb on + strand at 2476.885 kb on + strand at 2476.885 kb on + strand at 2476.885 kb on + strand at 2476.885 kb on + strand at 2476.885 kb on + strand at 2476.893 kb on - strand at 2476.893 kb on - strand at 2476.893 kb on - strand at 2476.934 kb on + strand at 2476.935 kb on - strand at 2476.951 kb on - strand at 2476.958 kb on - strand at 2476.977 kb on + strand at 2476.977 kb on - strand at 2476.987 kb on + strand at 2476.987 kb on + strand at 2476.987 kb on + strand at 2476.995 kb on - strand at 2476.995 kb on - strand at 2476.995 kb on - strand at 2476.995 kb on - strand at 2477.053 kb on + strand at 2477.090 kb on + strand at 2477.158 kb on + strand at 2477.170 kb on + strand at 2477.170 kb on + strand at 2477.178 kb on - strand at 2477.341 kb on - strand, within Dshi_2344 at 2477.345 kb on - strand, within Dshi_2344 at 2477.350 kb on - strand, within Dshi_2344 at 2477.350 kb on - strand, within Dshi_2344 at 2477.369 kb on - strand, within Dshi_2344 at 2477.435 kb on + strand, within Dshi_2344 at 2477.595 kb on + strand, within Dshi_2344 at 2477.595 kb on + strand, within Dshi_2344 at 2477.613 kb on - strand, within Dshi_2344 at 2477.723 kb on - strand, within Dshi_2344 at 2477.763 kb on + strand, within Dshi_2344 at 2477.814 kb on + strand, within Dshi_2344 at 2477.930 kb on - strand, within Dshi_2344 at 2478.075 kb on - strand, within Dshi_2344 at 2478.152 kb on + strand, within Dshi_2344 at 2478.347 kb on - strand, within Dshi_2344 at 2478.510 kb on - strand at 2478.510 kb on - strand at 2478.556 kb on - strand at 2478.906 kb on - strand, within Dshi_2345 at 2478.959 kb on + strand, within Dshi_2345 at 2478.967 kb on - strand, within Dshi_2345 at 2479.150 kb on + strand, within Dshi_2345 at 2479.172 kb on - strand at 2479.182 kb on - strand at 2479.193 kb on - strand at 2479.424 kb on - strand at 2479.441 kb on + strand at 2479.460 kb on - strand at 2479.460 kb on - strand at 2479.489 kb on + strand at 2479.510 kb on - strand at 2479.525 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,476,159 + Dshi_2343 0.30 -1.4 2,476,202 - Dshi_2343 0.34 -0.9 2,476,222 - Dshi_2343 0.36 +0.3 2,476,273 + Dshi_2343 0.41 -0.7 2,476,281 - Dshi_2343 0.41 -0.7 2,476,282 - Dshi_2343 0.41 +0.7 2,476,293 + Dshi_2343 0.42 +1.6 2,476,414 - Dshi_2343 0.53 +0.4 2,476,514 + Dshi_2343 0.63 -0.6 2,476,522 - Dshi_2343 0.63 -0.8 2,476,522 - Dshi_2343 0.63 -0.4 2,476,558 - Dshi_2343 0.67 -0.5 2,476,564 + Dshi_2343 0.67 -1.1 2,476,595 + Dshi_2343 0.70 -0.6 2,476,606 + Dshi_2343 0.71 -0.1 2,476,614 + Dshi_2343 0.72 -0.6 2,476,622 - Dshi_2343 0.73 +0.2 2,476,651 - Dshi_2343 0.75 -0.2 2,476,672 + Dshi_2343 0.77 -0.5 2,476,690 + Dshi_2343 0.79 -0.3 2,476,780 - Dshi_2343 0.87 -0.3 2,476,816 + +0.0 2,476,821 + +0.2 2,476,824 - -3.4 2,476,860 - -1.9 2,476,860 - -0.5 2,476,875 + +0.0 2,476,875 + -1.0 2,476,883 - -0.8 2,476,883 - -0.7 2,476,883 - -0.3 2,476,885 + -0.0 2,476,885 + +0.0 2,476,885 + -0.3 2,476,885 + +1.1 2,476,885 + +1.8 2,476,885 + -1.2 2,476,885 + -0.4 2,476,893 - -0.1 2,476,893 - -1.0 2,476,893 - +0.2 2,476,934 + +0.3 2,476,935 - -1.3 2,476,951 - -2.4 2,476,958 - -0.2 2,476,977 + +1.2 2,476,977 - +3.5 2,476,987 + +1.6 2,476,987 + -2.1 2,476,987 + +0.4 2,476,995 - -1.0 2,476,995 - +1.6 2,476,995 - +1.0 2,476,995 - -0.1 2,477,053 + -1.1 2,477,090 + -0.4 2,477,158 + +0.0 2,477,170 + -0.8 2,477,170 + -0.4 2,477,178 - +0.5 2,477,341 - Dshi_2344 0.15 +0.2 2,477,345 - Dshi_2344 0.15 +0.1 2,477,350 - Dshi_2344 0.15 -0.6 2,477,350 - Dshi_2344 0.15 -0.6 2,477,369 - Dshi_2344 0.17 -0.1 2,477,435 + Dshi_2344 0.21 -0.4 2,477,595 + Dshi_2344 0.32 +1.2 2,477,595 + Dshi_2344 0.32 +0.5 2,477,613 - Dshi_2344 0.34 +0.4 2,477,723 - Dshi_2344 0.41 +0.3 2,477,763 + Dshi_2344 0.44 -0.6 2,477,814 + Dshi_2344 0.48 +0.6 2,477,930 - Dshi_2344 0.56 -0.4 2,478,075 - Dshi_2344 0.66 -0.3 2,478,152 + Dshi_2344 0.71 -0.3 2,478,347 - Dshi_2344 0.85 +0.0 2,478,510 - -2.8 2,478,510 - -3.2 2,478,556 - -2.9 2,478,906 - Dshi_2345 0.51 +3.2 2,478,959 + Dshi_2345 0.59 +0.7 2,478,967 - Dshi_2345 0.60 -0.5 2,479,150 + Dshi_2345 0.88 -1.1 2,479,172 - +1.6 2,479,182 - -0.6 2,479,193 - +0.5 2,479,424 - -0.4 2,479,441 + +0.8 2,479,460 - -2.8 2,479,460 - -1.1 2,479,489 + -0.6 2,479,510 - +0.0 2,479,525 + +2.0
Or see this region's nucleotide sequence