Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2343

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2342 and Dshi_2343 are separated by 114 nucleotidesDshi_2343 and Dshi_2344 are separated by 208 nucleotides Dshi_2342: Dshi_2342 - TRAP-type mannitol/chloroaromatic compound transport system small permease component-like protein (RefSeq), at 2,474,765 to 2,475,718 _2342 Dshi_2343: Dshi_2343 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,475,833 to 2,476,918 _2343 Dshi_2344: Dshi_2344 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,477,127 to 2,478,569 _2344 Position (kb) 2475 2476 2477Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2474.837 kb on + strandat 2474.845 kb on - strandat 2474.944 kb on + strand, within Dshi_2342at 2474.973 kb on - strand, within Dshi_2342at 2474.982 kb on + strand, within Dshi_2342at 2475.038 kb on + strand, within Dshi_2342at 2475.040 kb on + strand, within Dshi_2342at 2475.158 kb on - strand, within Dshi_2342at 2475.171 kb on - strand, within Dshi_2342at 2475.173 kb on + strand, within Dshi_2342at 2475.216 kb on + strand, within Dshi_2342at 2475.216 kb on + strand, within Dshi_2342at 2475.345 kb on + strand, within Dshi_2342at 2475.429 kb on - strand, within Dshi_2342at 2475.449 kb on - strand, within Dshi_2342at 2475.450 kb on + strand, within Dshi_2342at 2475.458 kb on - strand, within Dshi_2342at 2475.480 kb on + strand, within Dshi_2342at 2475.544 kb on - strand, within Dshi_2342at 2475.560 kb on + strand, within Dshi_2342at 2475.568 kb on - strand, within Dshi_2342at 2475.570 kb on + strand, within Dshi_2342at 2475.571 kb on + strand, within Dshi_2342at 2475.579 kb on - strand, within Dshi_2342at 2475.579 kb on - strand, within Dshi_2342at 2475.604 kb on - strand, within Dshi_2342at 2475.645 kb on - strandat 2475.666 kb on - strandat 2475.766 kb on + strandat 2475.839 kb on - strandat 2476.030 kb on + strand, within Dshi_2343at 2476.040 kb on - strand, within Dshi_2343at 2476.049 kb on + strand, within Dshi_2343at 2476.049 kb on + strand, within Dshi_2343at 2476.057 kb on - strand, within Dshi_2343at 2476.057 kb on - strand, within Dshi_2343at 2476.062 kb on - strand, within Dshi_2343at 2476.083 kb on - strand, within Dshi_2343at 2476.126 kb on - strand, within Dshi_2343at 2476.159 kb on + strand, within Dshi_2343at 2476.202 kb on - strand, within Dshi_2343at 2476.222 kb on - strand, within Dshi_2343at 2476.273 kb on + strand, within Dshi_2343at 2476.281 kb on - strand, within Dshi_2343at 2476.282 kb on - strand, within Dshi_2343at 2476.293 kb on + strand, within Dshi_2343at 2476.414 kb on - strand, within Dshi_2343at 2476.514 kb on + strand, within Dshi_2343at 2476.522 kb on - strand, within Dshi_2343at 2476.522 kb on - strand, within Dshi_2343at 2476.558 kb on - strand, within Dshi_2343at 2476.564 kb on + strand, within Dshi_2343at 2476.595 kb on + strand, within Dshi_2343at 2476.606 kb on + strand, within Dshi_2343at 2476.614 kb on + strand, within Dshi_2343at 2476.622 kb on - strand, within Dshi_2343at 2476.651 kb on - strand, within Dshi_2343at 2476.672 kb on + strand, within Dshi_2343at 2476.690 kb on + strand, within Dshi_2343at 2476.780 kb on - strand, within Dshi_2343at 2476.816 kb on + strandat 2476.821 kb on + strandat 2476.824 kb on - strandat 2476.860 kb on - strandat 2476.860 kb on - strandat 2476.875 kb on + strandat 2476.875 kb on + strandat 2476.883 kb on - strandat 2476.883 kb on - strandat 2476.883 kb on - strandat 2476.885 kb on + strandat 2476.885 kb on + strandat 2476.885 kb on + strandat 2476.885 kb on + strandat 2476.885 kb on + strandat 2476.885 kb on + strandat 2476.885 kb on + strandat 2476.893 kb on - strandat 2476.893 kb on - strandat 2476.893 kb on - strandat 2476.934 kb on + strandat 2476.935 kb on - strandat 2476.951 kb on - strandat 2476.958 kb on - strandat 2476.977 kb on + strandat 2476.977 kb on - strandat 2476.987 kb on + strandat 2476.987 kb on + strandat 2476.987 kb on + strandat 2476.995 kb on - strandat 2476.995 kb on - strandat 2476.995 kb on - strandat 2476.995 kb on - strandat 2477.053 kb on + strandat 2477.090 kb on + strandat 2477.158 kb on + strandat 2477.170 kb on + strandat 2477.170 kb on + strandat 2477.178 kb on - strandat 2477.341 kb on - strand, within Dshi_2344at 2477.345 kb on - strand, within Dshi_2344at 2477.350 kb on - strand, within Dshi_2344at 2477.350 kb on - strand, within Dshi_2344at 2477.369 kb on - strand, within Dshi_2344at 2477.435 kb on + strand, within Dshi_2344at 2477.595 kb on + strand, within Dshi_2344at 2477.595 kb on + strand, within Dshi_2344at 2477.613 kb on - strand, within Dshi_2344at 2477.723 kb on - strand, within Dshi_2344at 2477.763 kb on + strand, within Dshi_2344at 2477.814 kb on + strand, within Dshi_2344

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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2,474,837 + -1.6
2,474,845 - -0.5
2,474,944 + Dshi_2342 0.19 +0.7
2,474,973 - Dshi_2342 0.22 -1.1
2,474,982 + Dshi_2342 0.23 -2.3
2,475,038 + Dshi_2342 0.29 -1.5
2,475,040 + Dshi_2342 0.29 +0.3
2,475,158 - Dshi_2342 0.41 +0.3
2,475,171 - Dshi_2342 0.43 -2.5
2,475,173 + Dshi_2342 0.43 +0.3
2,475,216 + Dshi_2342 0.47 -4.1
2,475,216 + Dshi_2342 0.47 +2.8
2,475,345 + Dshi_2342 0.61 -1.0
2,475,429 - Dshi_2342 0.70 -0.8
2,475,449 - Dshi_2342 0.72 -0.6
2,475,450 + Dshi_2342 0.72 +1.6
2,475,458 - Dshi_2342 0.73 +1.1
2,475,480 + Dshi_2342 0.75 +0.6
2,475,544 - Dshi_2342 0.82 -2.2
2,475,560 + Dshi_2342 0.83 -0.1
2,475,568 - Dshi_2342 0.84 -2.8
2,475,570 + Dshi_2342 0.84 -0.2
2,475,571 + Dshi_2342 0.84 +0.5
2,475,579 - Dshi_2342 0.85 -0.7
2,475,579 - Dshi_2342 0.85 +1.1
2,475,604 - Dshi_2342 0.88 -0.3
2,475,645 - -0.1
2,475,666 - -1.8
2,475,766 + +2.8
2,475,839 - -0.8
2,476,030 + Dshi_2343 0.18 -1.3
2,476,040 - Dshi_2343 0.19 -2.0
2,476,049 + Dshi_2343 0.20 -3.0
2,476,049 + Dshi_2343 0.20 -1.6
2,476,057 - Dshi_2343 0.21 -2.0
2,476,057 - Dshi_2343 0.21 -0.2
2,476,062 - Dshi_2343 0.21 -2.7
2,476,083 - Dshi_2343 0.23 -2.1
2,476,126 - Dshi_2343 0.27 +0.5
2,476,159 + Dshi_2343 0.30 -1.4
2,476,202 - Dshi_2343 0.34 -0.9
2,476,222 - Dshi_2343 0.36 +0.3
2,476,273 + Dshi_2343 0.41 -0.7
2,476,281 - Dshi_2343 0.41 -0.7
2,476,282 - Dshi_2343 0.41 +0.7
2,476,293 + Dshi_2343 0.42 +1.6
2,476,414 - Dshi_2343 0.53 +0.4
2,476,514 + Dshi_2343 0.63 -0.6
2,476,522 - Dshi_2343 0.63 -0.8
2,476,522 - Dshi_2343 0.63 -0.4
2,476,558 - Dshi_2343 0.67 -0.5
2,476,564 + Dshi_2343 0.67 -1.1
2,476,595 + Dshi_2343 0.70 -0.6
2,476,606 + Dshi_2343 0.71 -0.1
2,476,614 + Dshi_2343 0.72 -0.6
2,476,622 - Dshi_2343 0.73 +0.2
2,476,651 - Dshi_2343 0.75 -0.2
2,476,672 + Dshi_2343 0.77 -0.5
2,476,690 + Dshi_2343 0.79 -0.3
2,476,780 - Dshi_2343 0.87 -0.3
2,476,816 + +0.0
2,476,821 + +0.2
2,476,824 - -3.4
2,476,860 - -1.9
2,476,860 - -0.5
2,476,875 + +0.0
2,476,875 + -1.0
2,476,883 - -0.8
2,476,883 - -0.7
2,476,883 - -0.3
2,476,885 + -0.0
2,476,885 + +0.0
2,476,885 + -0.3
2,476,885 + +1.1
2,476,885 + +1.8
2,476,885 + -1.2
2,476,885 + -0.4
2,476,893 - -0.1
2,476,893 - -1.0
2,476,893 - +0.2
2,476,934 + +0.3
2,476,935 - -1.3
2,476,951 - -2.4
2,476,958 - -0.2
2,476,977 + +1.2
2,476,977 - +3.5
2,476,987 + +1.6
2,476,987 + -2.1
2,476,987 + +0.4
2,476,995 - -1.0
2,476,995 - +1.6
2,476,995 - +1.0
2,476,995 - -0.1
2,477,053 + -1.1
2,477,090 + -0.4
2,477,158 + +0.0
2,477,170 + -0.8
2,477,170 + -0.4
2,477,178 - +0.5
2,477,341 - Dshi_2344 0.15 +0.2
2,477,345 - Dshi_2344 0.15 +0.1
2,477,350 - Dshi_2344 0.15 -0.6
2,477,350 - Dshi_2344 0.15 -0.6
2,477,369 - Dshi_2344 0.17 -0.1
2,477,435 + Dshi_2344 0.21 -0.4
2,477,595 + Dshi_2344 0.32 +1.2
2,477,595 + Dshi_2344 0.32 +0.5
2,477,613 - Dshi_2344 0.34 +0.4
2,477,723 - Dshi_2344 0.41 +0.3
2,477,763 + Dshi_2344 0.44 -0.6
2,477,814 + Dshi_2344 0.48 +0.6

Or see this region's nucleotide sequence