Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2341 and Dshi_2342 are separated by 17 nucleotides Dshi_2342 and Dshi_2343 are separated by 114 nucleotides
Dshi_2341: Dshi_2341 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 2,472,393 to 2,474,747
_2341
Dshi_2342: Dshi_2342 - TRAP-type mannitol/chloroaromatic compound transport system small permease component-like protein (RefSeq), at 2,474,765 to 2,475,718
_2342
Dshi_2343: Dshi_2343 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,475,833 to 2,476,918
_2343
Position (kb)
2474
2475
2476 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2473.784 kb on + strand, within Dshi_2341 at 2473.828 kb on - strand, within Dshi_2341 at 2473.857 kb on - strand, within Dshi_2341 at 2473.897 kb on + strand, within Dshi_2341 at 2473.936 kb on + strand, within Dshi_2341 at 2473.944 kb on - strand, within Dshi_2341 at 2474.004 kb on + strand, within Dshi_2341 at 2474.125 kb on + strand, within Dshi_2341 at 2474.125 kb on + strand, within Dshi_2341 at 2474.163 kb on + strand, within Dshi_2341 at 2474.251 kb on - strand, within Dshi_2341 at 2474.363 kb on - strand, within Dshi_2341 at 2474.382 kb on + strand, within Dshi_2341 at 2474.390 kb on - strand, within Dshi_2341 at 2474.423 kb on - strand, within Dshi_2341 at 2474.490 kb on - strand, within Dshi_2341 at 2474.500 kb on - strand, within Dshi_2341 at 2474.500 kb on - strand, within Dshi_2341 at 2474.594 kb on + strand at 2474.594 kb on + strand at 2474.602 kb on - strand at 2474.604 kb on + strand at 2474.604 kb on + strand at 2474.604 kb on + strand at 2474.607 kb on - strand at 2474.612 kb on - strand at 2474.612 kb on - strand at 2474.658 kb on + strand at 2474.717 kb on - strand at 2474.825 kb on - strand at 2474.827 kb on + strand at 2474.837 kb on + strand at 2474.845 kb on - strand at 2474.944 kb on + strand, within Dshi_2342 at 2474.973 kb on - strand, within Dshi_2342 at 2474.982 kb on + strand, within Dshi_2342 at 2475.038 kb on + strand, within Dshi_2342 at 2475.040 kb on + strand, within Dshi_2342 at 2475.158 kb on - strand, within Dshi_2342 at 2475.171 kb on - strand, within Dshi_2342 at 2475.173 kb on + strand, within Dshi_2342 at 2475.216 kb on + strand, within Dshi_2342 at 2475.216 kb on + strand, within Dshi_2342 at 2475.345 kb on + strand, within Dshi_2342 at 2475.429 kb on - strand, within Dshi_2342 at 2475.449 kb on - strand, within Dshi_2342 at 2475.450 kb on + strand, within Dshi_2342 at 2475.458 kb on - strand, within Dshi_2342 at 2475.480 kb on + strand, within Dshi_2342 at 2475.544 kb on - strand, within Dshi_2342 at 2475.560 kb on + strand, within Dshi_2342 at 2475.568 kb on - strand, within Dshi_2342 at 2475.570 kb on + strand, within Dshi_2342 at 2475.571 kb on + strand, within Dshi_2342 at 2475.579 kb on - strand, within Dshi_2342 at 2475.579 kb on - strand, within Dshi_2342 at 2475.604 kb on - strand, within Dshi_2342 at 2475.645 kb on - strand at 2475.666 kb on - strand at 2475.766 kb on + strand at 2475.839 kb on - strand at 2476.030 kb on + strand, within Dshi_2343 at 2476.040 kb on - strand, within Dshi_2343 at 2476.049 kb on + strand, within Dshi_2343 at 2476.049 kb on + strand, within Dshi_2343 at 2476.057 kb on - strand, within Dshi_2343 at 2476.057 kb on - strand, within Dshi_2343 at 2476.062 kb on - strand, within Dshi_2343 at 2476.083 kb on - strand, within Dshi_2343 at 2476.126 kb on - strand, within Dshi_2343 at 2476.159 kb on + strand, within Dshi_2343 at 2476.202 kb on - strand, within Dshi_2343 at 2476.222 kb on - strand, within Dshi_2343 at 2476.273 kb on + strand, within Dshi_2343 at 2476.281 kb on - strand, within Dshi_2343 at 2476.282 kb on - strand, within Dshi_2343 at 2476.293 kb on + strand, within Dshi_2343 at 2476.414 kb on - strand, within Dshi_2343 at 2476.514 kb on + strand, within Dshi_2343 at 2476.522 kb on - strand, within Dshi_2343 at 2476.522 kb on - strand, within Dshi_2343 at 2476.558 kb on - strand, within Dshi_2343 at 2476.564 kb on + strand, within Dshi_2343 at 2476.595 kb on + strand, within Dshi_2343 at 2476.606 kb on + strand, within Dshi_2343 at 2476.614 kb on + strand, within Dshi_2343 at 2476.622 kb on - strand, within Dshi_2343 at 2476.651 kb on - strand, within Dshi_2343 at 2476.672 kb on + strand, within Dshi_2343 at 2476.690 kb on + strand, within Dshi_2343
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,473,784 + Dshi_2341 0.59 -0.3 2,473,828 - Dshi_2341 0.61 -1.1 2,473,857 - Dshi_2341 0.62 +0.6 2,473,897 + Dshi_2341 0.64 +0.5 2,473,936 + Dshi_2341 0.66 -1.5 2,473,944 - Dshi_2341 0.66 +0.4 2,474,004 + Dshi_2341 0.68 -0.5 2,474,125 + Dshi_2341 0.74 -0.8 2,474,125 + Dshi_2341 0.74 -0.6 2,474,163 + Dshi_2341 0.75 -0.5 2,474,251 - Dshi_2341 0.79 -1.3 2,474,363 - Dshi_2341 0.84 -0.1 2,474,382 + Dshi_2341 0.84 +0.5 2,474,390 - Dshi_2341 0.85 -0.4 2,474,423 - Dshi_2341 0.86 +0.3 2,474,490 - Dshi_2341 0.89 -0.6 2,474,500 - Dshi_2341 0.89 -0.0 2,474,500 - Dshi_2341 0.89 -0.1 2,474,594 + -1.2 2,474,594 + -1.1 2,474,602 - -0.5 2,474,604 + +0.0 2,474,604 + +1.6 2,474,604 + +0.0 2,474,607 - -0.3 2,474,612 - -1.0 2,474,612 - -0.6 2,474,658 + +0.3 2,474,717 - -0.6 2,474,825 - +0.7 2,474,827 + -0.9 2,474,837 + -1.6 2,474,845 - -0.5 2,474,944 + Dshi_2342 0.19 +0.7 2,474,973 - Dshi_2342 0.22 -1.1 2,474,982 + Dshi_2342 0.23 -2.3 2,475,038 + Dshi_2342 0.29 -1.5 2,475,040 + Dshi_2342 0.29 +0.3 2,475,158 - Dshi_2342 0.41 +0.3 2,475,171 - Dshi_2342 0.43 -2.5 2,475,173 + Dshi_2342 0.43 +0.3 2,475,216 + Dshi_2342 0.47 -4.1 2,475,216 + Dshi_2342 0.47 +2.8 2,475,345 + Dshi_2342 0.61 -1.0 2,475,429 - Dshi_2342 0.70 -0.8 2,475,449 - Dshi_2342 0.72 -0.6 2,475,450 + Dshi_2342 0.72 +1.6 2,475,458 - Dshi_2342 0.73 +1.1 2,475,480 + Dshi_2342 0.75 +0.6 2,475,544 - Dshi_2342 0.82 -2.2 2,475,560 + Dshi_2342 0.83 -0.1 2,475,568 - Dshi_2342 0.84 -2.8 2,475,570 + Dshi_2342 0.84 -0.2 2,475,571 + Dshi_2342 0.84 +0.5 2,475,579 - Dshi_2342 0.85 -0.7 2,475,579 - Dshi_2342 0.85 +1.1 2,475,604 - Dshi_2342 0.88 -0.3 2,475,645 - -0.1 2,475,666 - -1.8 2,475,766 + +2.8 2,475,839 - -0.8 2,476,030 + Dshi_2343 0.18 -1.3 2,476,040 - Dshi_2343 0.19 -2.0 2,476,049 + Dshi_2343 0.20 -3.0 2,476,049 + Dshi_2343 0.20 -1.6 2,476,057 - Dshi_2343 0.21 -2.0 2,476,057 - Dshi_2343 0.21 -0.2 2,476,062 - Dshi_2343 0.21 -2.7 2,476,083 - Dshi_2343 0.23 -2.1 2,476,126 - Dshi_2343 0.27 +0.5 2,476,159 + Dshi_2343 0.30 -1.4 2,476,202 - Dshi_2343 0.34 -0.9 2,476,222 - Dshi_2343 0.36 +0.3 2,476,273 + Dshi_2343 0.41 -0.7 2,476,281 - Dshi_2343 0.41 -0.7 2,476,282 - Dshi_2343 0.41 +0.7 2,476,293 + Dshi_2343 0.42 +1.6 2,476,414 - Dshi_2343 0.53 +0.4 2,476,514 + Dshi_2343 0.63 -0.6 2,476,522 - Dshi_2343 0.63 -0.8 2,476,522 - Dshi_2343 0.63 -0.4 2,476,558 - Dshi_2343 0.67 -0.5 2,476,564 + Dshi_2343 0.67 -1.1 2,476,595 + Dshi_2343 0.70 -0.6 2,476,606 + Dshi_2343 0.71 -0.1 2,476,614 + Dshi_2343 0.72 -0.6 2,476,622 - Dshi_2343 0.73 +0.2 2,476,651 - Dshi_2343 0.75 -0.2 2,476,672 + Dshi_2343 0.77 -0.5 2,476,690 + Dshi_2343 0.79 -0.3
Or see this region's nucleotide sequence