Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2072 and Dshi_2073 are separated by 444 nucleotides Dshi_2073 and Dshi_2074 are separated by 336 nucleotides Dshi_2074 and Dshi_2075 are separated by 99 nucleotides
Dshi_2072: Dshi_2072 - Gluconate 2-dehydrogenase (acceptor) (RefSeq), at 2,191,605 to 2,193,176
_2072
Dshi_2073: Dshi_2073 - hypothetical protein (RefSeq), at 2,193,621 to 2,194,550
_2073
Dshi_2074: Dshi_2074 - adenine phosphoribosyltransferase (RefSeq), at 2,194,887 to 2,195,426
_2074
Dshi_2075: Dshi_2075 - protein of unknown function DUF302 (RefSeq), at 2,195,526 to 2,195,978
_2075
Position (kb)
2193
2194
2195 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2192.656 kb on + strand, within Dshi_2072 at 2192.680 kb on + strand, within Dshi_2072 at 2192.763 kb on + strand, within Dshi_2072 at 2192.830 kb on - strand, within Dshi_2072 at 2192.843 kb on - strand, within Dshi_2072 at 2192.861 kb on + strand, within Dshi_2072 at 2192.861 kb on + strand, within Dshi_2072 at 2193.030 kb on - strand at 2193.051 kb on - strand at 2193.051 kb on - strand at 2193.074 kb on + strand at 2193.117 kb on + strand at 2193.160 kb on - strand at 2193.217 kb on - strand at 2193.251 kb on - strand at 2193.264 kb on + strand at 2193.288 kb on - strand at 2193.306 kb on - strand at 2193.323 kb on + strand at 2193.366 kb on + strand at 2193.445 kb on - strand at 2193.516 kb on + strand at 2193.580 kb on - strand at 2193.607 kb on - strand at 2193.654 kb on - strand at 2193.762 kb on + strand, within Dshi_2073 at 2193.852 kb on - strand, within Dshi_2073 at 2193.924 kb on - strand, within Dshi_2073 at 2193.995 kb on - strand, within Dshi_2073 at 2194.080 kb on - strand, within Dshi_2073 at 2194.234 kb on + strand, within Dshi_2073 at 2194.273 kb on - strand, within Dshi_2073 at 2194.330 kb on - strand, within Dshi_2073 at 2194.531 kb on - strand at 2194.571 kb on - strand at 2194.575 kb on + strand at 2194.581 kb on + strand at 2194.589 kb on - strand at 2194.601 kb on - strand at 2194.603 kb on - strand at 2194.640 kb on + strand at 2194.650 kb on + strand at 2194.668 kb on - strand at 2194.720 kb on - strand at 2194.733 kb on + strand at 2194.807 kb on - strand at 2194.814 kb on + strand at 2194.881 kb on - strand at 2194.934 kb on - strand at 2195.012 kb on - strand, within Dshi_2074 at 2195.082 kb on - strand, within Dshi_2074 at 2195.176 kb on - strand, within Dshi_2074 at 2195.314 kb on - strand, within Dshi_2074 at 2195.327 kb on - strand, within Dshi_2074 at 2195.380 kb on - strand at 2195.392 kb on - strand at 2195.407 kb on + strand at 2195.457 kb on + strand at 2195.535 kb on + strand at 2195.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,192,656 + Dshi_2072 0.67 -0.1 2,192,680 + Dshi_2072 0.68 +0.1 2,192,763 + Dshi_2072 0.74 +0.4 2,192,830 - Dshi_2072 0.78 +0.4 2,192,843 - Dshi_2072 0.79 -2.7 2,192,861 + Dshi_2072 0.80 +0.7 2,192,861 + Dshi_2072 0.80 +0.5 2,193,030 - +3.8 2,193,051 - -2.4 2,193,051 - +0.7 2,193,074 + +0.1 2,193,117 + -2.7 2,193,160 - +0.7 2,193,217 - +0.1 2,193,251 - +1.7 2,193,264 + -1.0 2,193,288 - -0.9 2,193,306 - -0.3 2,193,323 + +1.7 2,193,366 + +0.2 2,193,445 - -4.0 2,193,516 + -0.7 2,193,580 - -0.6 2,193,607 - -1.6 2,193,654 - -2.9 2,193,762 + Dshi_2073 0.15 -0.8 2,193,852 - Dshi_2073 0.25 -0.4 2,193,924 - Dshi_2073 0.33 +0.9 2,193,995 - Dshi_2073 0.40 +0.3 2,194,080 - Dshi_2073 0.49 +1.5 2,194,234 + Dshi_2073 0.66 -0.6 2,194,273 - Dshi_2073 0.70 +1.1 2,194,330 - Dshi_2073 0.76 -0.1 2,194,531 - +0.6 2,194,571 - +0.1 2,194,575 + +1.1 2,194,581 + -0.9 2,194,589 - +1.7 2,194,601 - +0.1 2,194,603 - +1.7 2,194,640 + +1.1 2,194,650 + -1.2 2,194,668 - +0.9 2,194,720 - -0.8 2,194,733 + -1.2 2,194,807 - -0.7 2,194,814 + -2.2 2,194,881 - +2.5 2,194,934 - -0.3 2,195,012 - Dshi_2074 0.23 -0.4 2,195,082 - Dshi_2074 0.36 +0.6 2,195,176 - Dshi_2074 0.54 +2.5 2,195,314 - Dshi_2074 0.79 -2.4 2,195,327 - Dshi_2074 0.81 +2.5 2,195,380 - +1.4 2,195,392 - -0.8 2,195,407 + -0.2 2,195,457 + -1.4 2,195,535 + -2.4 2,195,541 - +1.1
Or see this region's nucleotide sequence