Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1964

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1963 and Dshi_1964 are separated by 572 nucleotidesDshi_1964 and Dshi_1965 are separated by 105 nucleotides Dshi_1963: Dshi_1963 - Beta-ketoacyl synthase (RefSeq), at 2,062,881 to 2,070,542 _1963 Dshi_1964: Dshi_1964 - FkbH like protein (RefSeq), at 2,071,115 to 2,072,833 _1964 Dshi_1965: Dshi_1965 - hypothetical protein (RefSeq), at 2,072,939 to 2,073,871 _1965 Position (kb) 2071 2072 2073Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2070.201 kb on - strandat 2070.262 kb on + strandat 2070.395 kb on - strandat 2070.498 kb on + strandat 2070.552 kb on + strandat 2070.560 kb on - strandat 2070.587 kb on + strandat 2070.595 kb on - strandat 2070.600 kb on + strandat 2070.619 kb on + strandat 2070.624 kb on + strandat 2070.624 kb on + strandat 2070.624 kb on + strandat 2070.624 kb on + strandat 2070.624 kb on + strandat 2070.624 kb on + strandat 2070.624 kb on + strandat 2070.624 kb on + strandat 2070.631 kb on + strandat 2070.631 kb on + strandat 2070.632 kb on - strandat 2070.632 kb on - strandat 2070.632 kb on - strandat 2070.632 kb on - strandat 2070.632 kb on - strandat 2070.632 kb on - strandat 2070.632 kb on - strandat 2070.639 kb on - strandat 2070.639 kb on - strandat 2070.639 kb on - strandat 2070.649 kb on - strandat 2070.656 kb on - strandat 2070.657 kb on + strandat 2070.664 kb on - strandat 2070.666 kb on - strandat 2070.758 kb on + strandat 2070.823 kb on - strandat 2070.849 kb on + strandat 2070.851 kb on + strandat 2070.851 kb on + strandat 2070.854 kb on + strandat 2070.861 kb on + strandat 2070.899 kb on + strandat 2070.925 kb on - strandat 2070.940 kb on + strandat 2070.978 kb on + strandat 2070.991 kb on + strandat 2070.991 kb on + strandat 2070.991 kb on + strandat 2070.999 kb on - strandat 2070.999 kb on - strandat 2070.999 kb on - strandat 2070.999 kb on - strandat 2070.999 kb on - strandat 2071.072 kb on + strandat 2071.080 kb on - strandat 2071.095 kb on - strandat 2071.112 kb on - strandat 2071.140 kb on + strandat 2071.140 kb on + strandat 2071.140 kb on + strandat 2071.140 kb on + strandat 2071.140 kb on + strandat 2071.148 kb on - strandat 2071.148 kb on - strandat 2071.148 kb on - strandat 2071.250 kb on - strandat 2071.279 kb on - strandat 2071.279 kb on - strandat 2071.290 kb on + strand, within Dshi_1964at 2071.432 kb on + strand, within Dshi_1964at 2071.444 kb on + strand, within Dshi_1964at 2071.531 kb on - strand, within Dshi_1964at 2071.561 kb on - strand, within Dshi_1964at 2071.562 kb on - strand, within Dshi_1964at 2071.597 kb on - strand, within Dshi_1964at 2071.599 kb on + strand, within Dshi_1964at 2071.637 kb on - strand, within Dshi_1964at 2071.654 kb on + strand, within Dshi_1964at 2071.749 kb on - strand, within Dshi_1964at 2071.885 kb on - strand, within Dshi_1964at 2071.905 kb on + strand, within Dshi_1964at 2071.924 kb on - strand, within Dshi_1964at 2072.002 kb on + strand, within Dshi_1964at 2072.002 kb on + strand, within Dshi_1964at 2072.008 kb on + strand, within Dshi_1964at 2072.016 kb on - strand, within Dshi_1964at 2072.098 kb on - strand, within Dshi_1964at 2072.117 kb on - strand, within Dshi_1964at 2072.149 kb on + strand, within Dshi_1964at 2072.153 kb on - strand, within Dshi_1964at 2072.155 kb on - strand, within Dshi_1964at 2072.293 kb on - strand, within Dshi_1964at 2072.293 kb on - strand, within Dshi_1964at 2072.320 kb on - strand, within Dshi_1964at 2072.325 kb on + strand, within Dshi_1964at 2072.448 kb on + strand, within Dshi_1964at 2072.464 kb on - strand, within Dshi_1964at 2072.578 kb on + strand, within Dshi_1964at 2072.635 kb on - strand, within Dshi_1964at 2072.659 kb on + strand, within Dshi_1964at 2072.731 kb on + strandat 2072.793 kb on + strandat 2072.851 kb on - strandat 2072.864 kb on + strandat 2072.872 kb on - strandat 2072.885 kb on + strandat 2072.945 kb on + strandat 2073.040 kb on - strand, within Dshi_1965at 2073.074 kb on - strand, within Dshi_1965at 2073.074 kb on - strand, within Dshi_1965at 2073.079 kb on + strand, within Dshi_1965at 2073.146 kb on + strand, within Dshi_1965at 2073.302 kb on + strand, within Dshi_1965at 2073.483 kb on + strand, within Dshi_1965at 2073.491 kb on - strand, within Dshi_1965at 2073.491 kb on - strand, within Dshi_1965at 2073.491 kb on - strand, within Dshi_1965at 2073.605 kb on + strand, within Dshi_1965at 2073.683 kb on + strand, within Dshi_1965at 2073.709 kb on - strand, within Dshi_1965

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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2,070,201 - -0.4
2,070,262 + -0.7
2,070,395 - -1.3
2,070,498 + -0.4
2,070,552 + +3.1
2,070,560 - -0.9
2,070,587 + -1.9
2,070,595 - -2.7
2,070,600 + -1.3
2,070,619 + -1.3
2,070,624 + +2.7
2,070,624 + -0.8
2,070,624 + +0.3
2,070,624 + +0.1
2,070,624 + +1.5
2,070,624 + +1.8
2,070,624 + +2.1
2,070,624 + -3.5
2,070,631 + -0.1
2,070,631 + -0.5
2,070,632 - +0.1
2,070,632 - +0.1
2,070,632 - +1.1
2,070,632 - -2.2
2,070,632 - +2.1
2,070,632 - -1.6
2,070,632 - +2.4
2,070,639 - -0.9
2,070,639 - +0.1
2,070,639 - +2.0
2,070,649 - -0.9
2,070,656 - +1.7
2,070,657 + -0.9
2,070,664 - -0.5
2,070,666 - +0.2
2,070,758 + -1.5
2,070,823 - -1.2
2,070,849 + +0.1
2,070,851 + +0.1
2,070,851 + -0.1
2,070,854 + -0.1
2,070,861 + -1.1
2,070,899 + -0.6
2,070,925 - -0.7
2,070,940 + -1.7
2,070,978 + -0.9
2,070,991 + -0.1
2,070,991 + +2.4
2,070,991 + -0.2
2,070,999 - +2.7
2,070,999 - -1.0
2,070,999 - -0.7
2,070,999 - -0.6
2,070,999 - +1.1
2,071,072 + +0.5
2,071,080 - -0.3
2,071,095 - +0.4
2,071,112 - -0.5
2,071,140 + -0.3
2,071,140 + -1.2
2,071,140 + -0.8
2,071,140 + -2.2
2,071,140 + -0.3
2,071,148 - -0.8
2,071,148 - +0.1
2,071,148 - -2.5
2,071,250 - -0.8
2,071,279 - -2.9
2,071,279 - +0.3
2,071,290 + Dshi_1964 0.10 +0.7
2,071,432 + Dshi_1964 0.18 -4.0
2,071,444 + Dshi_1964 0.19 -0.8
2,071,531 - Dshi_1964 0.24 +0.2
2,071,561 - Dshi_1964 0.26 -1.3
2,071,562 - Dshi_1964 0.26 -1.1
2,071,597 - Dshi_1964 0.28 +0.1
2,071,599 + Dshi_1964 0.28 +0.1
2,071,637 - Dshi_1964 0.30 -1.9
2,071,654 + Dshi_1964 0.31 +1.3
2,071,749 - Dshi_1964 0.37 +0.3
2,071,885 - Dshi_1964 0.45 +0.1
2,071,905 + Dshi_1964 0.46 +0.1
2,071,924 - Dshi_1964 0.47 -2.1
2,072,002 + Dshi_1964 0.52 -0.1
2,072,002 + Dshi_1964 0.52 -1.9
2,072,008 + Dshi_1964 0.52 -1.2
2,072,016 - Dshi_1964 0.52 -4.5
2,072,098 - Dshi_1964 0.57 -0.5
2,072,117 - Dshi_1964 0.58 -1.9
2,072,149 + Dshi_1964 0.60 -0.9
2,072,153 - Dshi_1964 0.60 -0.9
2,072,155 - Dshi_1964 0.61 -2.7
2,072,293 - Dshi_1964 0.69 -2.9
2,072,293 - Dshi_1964 0.69 -1.2
2,072,320 - Dshi_1964 0.70 +0.8
2,072,325 + Dshi_1964 0.70 -1.3
2,072,448 + Dshi_1964 0.78 +2.3
2,072,464 - Dshi_1964 0.78 -1.8
2,072,578 + Dshi_1964 0.85 -0.7
2,072,635 - Dshi_1964 0.88 -1.0
2,072,659 + Dshi_1964 0.90 -1.4
2,072,731 + +0.1
2,072,793 + +0.3
2,072,851 - -0.8
2,072,864 + -0.5
2,072,872 - -0.1
2,072,885 + -0.2
2,072,945 + +0.1
2,073,040 - Dshi_1965 0.11 -3.0
2,073,074 - Dshi_1965 0.14 -0.9
2,073,074 - Dshi_1965 0.14 -0.4
2,073,079 + Dshi_1965 0.15 +0.6
2,073,146 + Dshi_1965 0.22 -3.5
2,073,302 + Dshi_1965 0.39 +0.5
2,073,483 + Dshi_1965 0.58 -1.8
2,073,491 - Dshi_1965 0.59 -0.5
2,073,491 - Dshi_1965 0.59 +1.4
2,073,491 - Dshi_1965 0.59 -1.1
2,073,605 + Dshi_1965 0.71 -0.5
2,073,683 + Dshi_1965 0.80 +2.9
2,073,709 - Dshi_1965 0.83 -0.7

Or see this region's nucleotide sequence