Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1815

Experiment: m.b. 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1814 and Dshi_1815 are separated by 384 nucleotidesDshi_1815 and Dshi_1816 are separated by 87 nucleotides Dshi_1814: Dshi_1814 - hypothetical protein (RefSeq), at 1,891,703 to 1,892,863 _1814 Dshi_1815: Dshi_1815 - transcriptional regulator, LuxR family (RefSeq), at 1,893,248 to 1,894,045 _1815 Dshi_1816: Dshi_1816 - MscS Mechanosensitive ion channel (RefSeq), at 1,894,133 to 1,895,479 _1816 Position (kb) 1893 1894 1895Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1892.288 kb on - strand, within Dshi_1814at 1892.307 kb on - strand, within Dshi_1814at 1892.423 kb on - strand, within Dshi_1814at 1892.523 kb on - strand, within Dshi_1814at 1892.534 kb on + strand, within Dshi_1814at 1892.544 kb on + strand, within Dshi_1814at 1892.594 kb on + strand, within Dshi_1814at 1892.770 kb on - strandat 1893.143 kb on - strandat 1893.247 kb on - strandat 1893.270 kb on + strandat 1893.331 kb on - strand, within Dshi_1815at 1893.333 kb on - strand, within Dshi_1815at 1893.365 kb on + strand, within Dshi_1815at 1893.498 kb on - strand, within Dshi_1815at 1893.549 kb on - strand, within Dshi_1815at 1893.732 kb on + strand, within Dshi_1815at 1893.776 kb on + strand, within Dshi_1815at 1893.961 kb on - strand, within Dshi_1815at 1893.974 kb on - strandat 1894.055 kb on + strandat 1894.168 kb on + strandat 1894.203 kb on - strandat 1894.248 kb on - strandat 1894.253 kb on - strandat 1894.302 kb on - strand, within Dshi_1816at 1894.302 kb on - strand, within Dshi_1816at 1894.335 kb on - strand, within Dshi_1816at 1894.401 kb on - strand, within Dshi_1816at 1894.543 kb on - strand, within Dshi_1816at 1894.585 kb on - strand, within Dshi_1816at 1894.659 kb on + strand, within Dshi_1816at 1894.687 kb on + strand, within Dshi_1816at 1894.921 kb on - strand, within Dshi_1816at 1894.982 kb on - strand, within Dshi_1816

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
remove
1,892,288 - Dshi_1814 0.50 -0.4
1,892,307 - Dshi_1814 0.52 +1.1
1,892,423 - Dshi_1814 0.62 -3.0
1,892,523 - Dshi_1814 0.71 +0.1
1,892,534 + Dshi_1814 0.72 -0.6
1,892,544 + Dshi_1814 0.72 -2.2
1,892,594 + Dshi_1814 0.77 +0.7
1,892,770 - -2.7
1,893,143 - -0.5
1,893,247 - -0.3
1,893,270 + -0.9
1,893,331 - Dshi_1815 0.10 +2.7
1,893,333 - Dshi_1815 0.11 +3.4
1,893,365 + Dshi_1815 0.15 +0.1
1,893,498 - Dshi_1815 0.31 -2.7
1,893,549 - Dshi_1815 0.38 +0.1
1,893,732 + Dshi_1815 0.61 -0.2
1,893,776 + Dshi_1815 0.66 -1.3
1,893,961 - Dshi_1815 0.89 +1.0
1,893,974 - +0.1
1,894,055 + +1.7
1,894,168 + -0.9
1,894,203 - -0.5
1,894,248 - -1.2
1,894,253 - -1.9
1,894,302 - Dshi_1816 0.13 +0.5
1,894,302 - Dshi_1816 0.13 -3.1
1,894,335 - Dshi_1816 0.15 -1.6
1,894,401 - Dshi_1816 0.20 +0.1
1,894,543 - Dshi_1816 0.30 +0.7
1,894,585 - Dshi_1816 0.34 -0.8
1,894,659 + Dshi_1816 0.39 +0.1
1,894,687 + Dshi_1816 0.41 -1.1
1,894,921 - Dshi_1816 0.59 -0.5
1,894,982 - Dshi_1816 0.63 -1.2

Or see this region's nucleotide sequence