Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1797 and Dshi_1798 are separated by 183 nucleotides Dshi_1798 and Dshi_1799 overlap by 4 nucleotides Dshi_1799 and Dshi_1800 overlap by 4 nucleotides Dshi_1800 and Dshi_1801 overlap by 4 nucleotides
Dshi_1797: Dshi_1797 - protein of unknown function DUF610, YibQ (RefSeq), at 1,868,767 to 1,870,593
_1797
Dshi_1798: Dshi_1798 - glutamine amidotransferase of anthranilate synthase (RefSeq), at 1,870,777 to 1,871,382
_1798
Dshi_1799: Dshi_1799 - anthranilate phosphoribosyltransferase (RefSeq), at 1,871,379 to 1,872,398
_1799
Dshi_1800: Dshi_1800 - Indole-3-glycerol-phosphate synthase (RefSeq), at 1,872,395 to 1,873,210
_1800
Dshi_1801: Dshi_1801 - molybdenum cofactor biosynthesis protein C (RefSeq), at 1,873,207 to 1,873,683
_1801
Position (kb)
1871
1872
1873 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1870.559 kb on + strand at 1870.567 kb on - strand at 1870.576 kb on + strand at 1870.582 kb on + strand at 1870.599 kb on + strand at 1870.720 kb on + strand at 1870.720 kb on + strand at 1870.728 kb on - strand at 1873.192 kb on + strand at 1873.269 kb on + strand, within Dshi_1801 at 1873.335 kb on + strand, within Dshi_1801
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 1,870,559 + -2.9 1,870,567 - -1.8 1,870,576 + -0.5 1,870,582 + +0.6 1,870,599 + +0.1 1,870,720 + +1.6 1,870,720 + +1.6 1,870,728 - +0.1 1,873,192 + +0.1 1,873,269 + Dshi_1801 0.13 -0.9 1,873,335 + Dshi_1801 0.27 -2.5
Or see this region's nucleotide sequence