Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1715 and Dshi_1716 overlap by 4 nucleotides Dshi_1716 and Dshi_1717 are separated by 200 nucleotides Dshi_1717 and Dshi_1718 are separated by 223 nucleotides
Dshi_1715: Dshi_1715 - sulfotransferase (RefSeq), at 1,783,558 to 1,784,403
_1715
Dshi_1716: Dshi_1716 - hypothetical protein (RefSeq), at 1,784,400 to 1,784,858
_1716
Dshi_1717: Dshi_1717 - hypothetical protein (RefSeq), at 1,785,059 to 1,785,622
_1717
Dshi_1718: Dshi_1718 - ribosomal protein L32 (RefSeq), at 1,785,846 to 1,786,052
_1718
Position (kb) 1784
1785 Strain fitness (log2 ratio) -2
-1
0
1 at 1783.553 kb on - strand at 1783.580 kb on - strand at 1783.625 kb on - strand at 1783.731 kb on + strand, within Dshi_1715 at 1783.877 kb on + strand, within Dshi_1715 at 1784.158 kb on - strand, within Dshi_1715 at 1784.276 kb on - strand, within Dshi_1715 at 1784.365 kb on + strand at 1784.379 kb on - strand at 1784.379 kb on - strand at 1785.509 kb on - strand, within Dshi_1717 at 1785.521 kb on + strand, within Dshi_1717 at 1785.535 kb on + strand, within Dshi_1717 at 1785.660 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 1,783,553 - +0.1 1,783,580 - -1.2 1,783,625 - +0.6 1,783,731 + Dshi_1715 0.20 -0.1 1,783,877 + Dshi_1715 0.38 +1.1 1,784,158 - Dshi_1715 0.71 -2.4 1,784,276 - Dshi_1715 0.85 +0.8 1,784,365 + -1.1 1,784,379 - -2.3 1,784,379 - -1.2 1,785,509 - Dshi_1717 0.80 +0.6 1,785,521 + Dshi_1717 0.82 -1.4 1,785,535 + Dshi_1717 0.84 -1.4 1,785,660 + -0.8
Or see this region's nucleotide sequence