Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1557

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1556 and Dshi_1557 overlap by 14 nucleotidesDshi_1557 and Dshi_1558 overlap by 34 nucleotidesDshi_1558 and Dshi_1559 are separated by 115 nucleotides Dshi_1556: Dshi_1556 - AMP-dependent synthetase and ligase (RefSeq), at 1,617,876 to 1,619,435 _1556 Dshi_1557: Dshi_1557 - DSBA oxidoreductase (RefSeq), at 1,619,422 to 1,620,090 _1557 Dshi_1558: Dshi_1558 - hypothetical protein (RefSeq), at 1,620,057 to 1,620,377 _1558 Dshi_1559: Dshi_1559 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 1,620,493 to 1,621,701 _1559 Position (kb) 1619 1620 1621Strain fitness (log2 ratio) -2 -1 0 1 2at 1618.428 kb on - strand, within Dshi_1556at 1618.430 kb on + strand, within Dshi_1556at 1618.713 kb on + strand, within Dshi_1556at 1618.878 kb on + strand, within Dshi_1556at 1618.886 kb on - strand, within Dshi_1556at 1618.939 kb on + strand, within Dshi_1556at 1619.104 kb on + strand, within Dshi_1556at 1619.104 kb on + strand, within Dshi_1556at 1619.233 kb on + strand, within Dshi_1556at 1619.692 kb on + strand, within Dshi_1557at 1619.752 kb on - strand, within Dshi_1557at 1620.354 kb on + strandat 1620.374 kb on + strandat 1620.505 kb on + strandat 1620.651 kb on - strand, within Dshi_1559at 1620.768 kb on + strand, within Dshi_1559at 1620.843 kb on + strand, within Dshi_1559at 1620.878 kb on - strand, within Dshi_1559at 1620.878 kb on - strand, within Dshi_1559

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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1,618,428 - Dshi_1556 0.35 -2.6
1,618,430 + Dshi_1556 0.36 +1.6
1,618,713 + Dshi_1556 0.54 +1.0
1,618,878 + Dshi_1556 0.64 -0.7
1,618,886 - Dshi_1556 0.65 +0.0
1,618,939 + Dshi_1556 0.68 -0.9
1,619,104 + Dshi_1556 0.79 -0.6
1,619,104 + Dshi_1556 0.79 +1.5
1,619,233 + Dshi_1556 0.87 -0.8
1,619,692 + Dshi_1557 0.40 -1.2
1,619,752 - Dshi_1557 0.49 +1.0
1,620,354 + +0.6
1,620,374 + -1.2
1,620,505 + -1.0
1,620,651 - Dshi_1559 0.13 -1.0
1,620,768 + Dshi_1559 0.23 +2.0
1,620,843 + Dshi_1559 0.29 -1.7
1,620,878 - Dshi_1559 0.32 +1.3
1,620,878 - Dshi_1559 0.32 -0.7

Or see this region's nucleotide sequence