Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1342 and Dshi_1343 are separated by 193 nucleotides Dshi_1343 and Dshi_1344 are separated by 18 nucleotides Dshi_1344 and Dshi_1345 are separated by 8 nucleotides Dshi_1345 and Dshi_1346 overlap by 4 nucleotides Dshi_1346 and Dshi_1347 are separated by 97 nucleotides
Dshi_1342: Dshi_1342 - Helix-turn-helix type 11 domain protein (RefSeq), at 1,395,858 to 1,396,517
_1342
Dshi_1343: Dshi_1343 - sec-independent translocation protein mttA/Hcf106 (RefSeq), at 1,396,711 to 1,396,935
_1343
Dshi_1344: Dshi_1344 - twin-arginine translocation protein, TatB subunit (RefSeq), at 1,396,954 to 1,397,421
_1344
Dshi_1345: Dshi_1345 - Sec-independent protein translocase, TatC subunit (RefSeq), at 1,397,430 to 1,398,470
_1345
Dshi_1346: Dshi_1346 - protein of unknown function DUF815 (RefSeq), at 1,398,467 to 1,399,318
_1346
Dshi_1347: Dshi_1347 - hypothetical protein (RefSeq), at 1,399,416 to 1,400,000
_1347
Position (kb)
1397
1398
1399 Strain fitness (log2 ratio)
-1
0
1 at 1396.485 kb on + strand at 1396.510 kb on - strand at 1398.650 kb on + strand, within Dshi_1346 at 1398.712 kb on + strand, within Dshi_1346 at 1398.712 kb on + strand, within Dshi_1346 at 1398.748 kb on + strand, within Dshi_1346 at 1398.893 kb on + strand, within Dshi_1346 at 1399.028 kb on + strand, within Dshi_1346 at 1399.206 kb on + strand, within Dshi_1346 at 1399.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 1,396,485 + +0.2 1,396,510 - -1.3 1,398,650 + Dshi_1346 0.21 -1.1 1,398,712 + Dshi_1346 0.29 -1.0 1,398,712 + Dshi_1346 0.29 +0.6 1,398,748 + Dshi_1346 0.33 -0.5 1,398,893 + Dshi_1346 0.50 -0.9 1,399,028 + Dshi_1346 0.66 +0.1 1,399,206 + Dshi_1346 0.87 -1.0 1,399,240 - +0.4
Or see this region's nucleotide sequence