Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1202

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1200 and Dshi_1201 are separated by 88 nucleotidesDshi_1201 and Dshi_R0025 are separated by 51 nucleotidesDshi_R0025 and Dshi_1202 are separated by 18 nucleotidesDshi_1202 and Dshi_1203 are separated by 72 nucleotidesDshi_1203 and Dshi_1204 are separated by 9 nucleotides Dshi_1200: Dshi_1200 - Rhomboid family protein (RefSeq), at 1,240,915 to 1,241,691 _1200 Dshi_1201: Dshi_1201 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 1,241,780 to 1,242,331 _1201 Dshi_R0025: Dshi_R0025 - tRNA-Leu (RefSeq), at 1,242,383 to 1,242,468 _R0025 Dshi_1202: Dshi_1202 - heat shock protein DnaJ domain protein (RefSeq), at 1,242,487 to 1,243,116 _1202 Dshi_1203: Dshi_1203 - BolA family protein (RefSeq), at 1,243,189 to 1,243,446 _1203 Dshi_1204: Dshi_1204 - hypothetical protein (RefSeq), at 1,243,456 to 1,243,872 _1204 Position (kb) 1242 1243 1244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1241.680 kb on + strandat 1241.691 kb on - strandat 1241.700 kb on + strandat 1241.705 kb on + strandat 1242.039 kb on + strand, within Dshi_1201at 1242.098 kb on - strand, within Dshi_1201at 1242.214 kb on - strand, within Dshi_1201at 1242.481 kb on - strandat 1242.935 kb on - strand, within Dshi_1202at 1242.982 kb on - strand, within Dshi_1202at 1243.008 kb on + strand, within Dshi_1202at 1243.008 kb on + strand, within Dshi_1202at 1243.034 kb on + strand, within Dshi_1202at 1243.126 kb on + strandat 1243.147 kb on + strandat 1243.155 kb on - strandat 1243.155 kb on - strandat 1243.155 kb on - strandat 1243.166 kb on - strandat 1243.224 kb on - strand, within Dshi_1203at 1243.230 kb on - strand, within Dshi_1203at 1243.440 kb on + strandat 1243.602 kb on - strand, within Dshi_1204at 1243.673 kb on + strand, within Dshi_1204at 1243.681 kb on - strand, within Dshi_1204at 1243.704 kb on - strand, within Dshi_1204at 1243.728 kb on - strand, within Dshi_1204at 1243.829 kb on - strand, within Dshi_1204at 1243.924 kb on - strandat 1243.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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1,241,680 + +0.8
1,241,691 - +1.8
1,241,700 + -1.6
1,241,705 + -0.9
1,242,039 + Dshi_1201 0.47 +3.7
1,242,098 - Dshi_1201 0.58 +2.7
1,242,214 - Dshi_1201 0.79 +0.1
1,242,481 - -2.0
1,242,935 - Dshi_1202 0.71 +0.1
1,242,982 - Dshi_1202 0.79 -4.1
1,243,008 + Dshi_1202 0.83 -2.5
1,243,008 + Dshi_1202 0.83 +0.1
1,243,034 + Dshi_1202 0.87 -1.9
1,243,126 + +0.1
1,243,147 + -0.6
1,243,155 - -1.7
1,243,155 - -1.5
1,243,155 - -2.8
1,243,166 - -2.7
1,243,224 - Dshi_1203 0.14 +0.1
1,243,230 - Dshi_1203 0.16 -1.0
1,243,440 + +0.1
1,243,602 - Dshi_1204 0.35 +0.4
1,243,673 + Dshi_1204 0.52 +0.3
1,243,681 - Dshi_1204 0.54 +0.1
1,243,704 - Dshi_1204 0.59 -0.9
1,243,728 - Dshi_1204 0.65 +0.7
1,243,829 - Dshi_1204 0.89 -0.5
1,243,924 - -1.5
1,243,941 - -4.5

Or see this region's nucleotide sequence