Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1094

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1092 and Dshi_1093 are separated by 60 nucleotidesDshi_1093 and Dshi_1094 are separated by 80 nucleotidesDshi_1094 and Dshi_1095 are separated by 113 nucleotides Dshi_1092: Dshi_1092 - carboxyvinyl-carboxyphosphonatephosphorylmutase (RefSeq), at 1,119,841 to 1,120,722 _1092 Dshi_1093: Dshi_1093 - hypothetical protein (RefSeq), at 1,120,783 to 1,121,310 _1093 Dshi_1094: Dshi_1094 - transcriptional regulator, Fis family (RefSeq), at 1,121,391 to 1,122,380 _1094 Dshi_1095: Dshi_1095 - aldehyde dehydrogenase (RefSeq), at 1,122,494 to 1,124,014 _1095 Position (kb) 1121 1122 1123Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1120.501 kb on - strand, within Dshi_1092at 1120.501 kb on - strand, within Dshi_1092at 1120.501 kb on - strand, within Dshi_1092at 1120.555 kb on - strand, within Dshi_1092at 1120.622 kb on - strand, within Dshi_1092at 1120.783 kb on - strandat 1120.809 kb on + strandat 1120.828 kb on + strandat 1120.849 kb on + strand, within Dshi_1093at 1120.864 kb on - strand, within Dshi_1093at 1120.959 kb on + strand, within Dshi_1093at 1120.967 kb on - strand, within Dshi_1093at 1120.976 kb on + strand, within Dshi_1093at 1120.976 kb on + strand, within Dshi_1093at 1120.979 kb on - strand, within Dshi_1093at 1120.979 kb on - strand, within Dshi_1093at 1120.979 kb on - strand, within Dshi_1093at 1121.154 kb on + strand, within Dshi_1093at 1121.162 kb on - strand, within Dshi_1093at 1121.260 kb on - strandat 1121.261 kb on + strandat 1121.294 kb on - strandat 1121.307 kb on - strandat 1121.352 kb on + strandat 1121.373 kb on + strandat 1121.498 kb on + strand, within Dshi_1094at 1121.498 kb on + strand, within Dshi_1094at 1121.498 kb on + strand, within Dshi_1094at 1121.699 kb on + strand, within Dshi_1094at 1121.810 kb on - strand, within Dshi_1094at 1121.843 kb on - strand, within Dshi_1094at 1121.947 kb on + strand, within Dshi_1094at 1122.022 kb on - strand, within Dshi_1094at 1122.032 kb on - strand, within Dshi_1094at 1122.069 kb on + strand, within Dshi_1094at 1122.396 kb on + strandat 1122.415 kb on + strandat 1122.434 kb on + strandat 1122.434 kb on + strandat 1122.442 kb on - strandat 1122.442 kb on - strandat 1122.442 kb on - strandat 1122.443 kb on - strandat 1122.462 kb on + strandat 1122.889 kb on - strand, within Dshi_1095at 1122.889 kb on - strand, within Dshi_1095at 1122.988 kb on - strand, within Dshi_1095at 1123.039 kb on + strand, within Dshi_1095at 1123.088 kb on + strand, within Dshi_1095at 1123.127 kb on + strand, within Dshi_1095at 1123.182 kb on - strand, within Dshi_1095at 1123.211 kb on - strand, within Dshi_1095at 1123.323 kb on - strand, within Dshi_1095at 1123.335 kb on - strand, within Dshi_1095

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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1,120,501 - Dshi_1092 0.75 -0.2
1,120,501 - Dshi_1092 0.75 +1.3
1,120,501 - Dshi_1092 0.75 +0.2
1,120,555 - Dshi_1092 0.81 -0.1
1,120,622 - Dshi_1092 0.89 +2.6
1,120,783 - -0.8
1,120,809 + -0.9
1,120,828 + +0.1
1,120,849 + Dshi_1093 0.12 -1.9
1,120,864 - Dshi_1093 0.15 -0.5
1,120,959 + Dshi_1093 0.33 -0.6
1,120,967 - Dshi_1093 0.35 -2.1
1,120,976 + Dshi_1093 0.37 +0.1
1,120,976 + Dshi_1093 0.37 +0.1
1,120,979 - Dshi_1093 0.37 -0.8
1,120,979 - Dshi_1093 0.37 +0.1
1,120,979 - Dshi_1093 0.37 -0.2
1,121,154 + Dshi_1093 0.70 +0.3
1,121,162 - Dshi_1093 0.72 -0.6
1,121,260 - -0.8
1,121,261 + -4.6
1,121,294 - +0.0
1,121,307 - +1.7
1,121,352 + +2.4
1,121,373 + -1.7
1,121,498 + Dshi_1094 0.11 -1.0
1,121,498 + Dshi_1094 0.11 -0.3
1,121,498 + Dshi_1094 0.11 -0.9
1,121,699 + Dshi_1094 0.31 +1.3
1,121,810 - Dshi_1094 0.42 +0.4
1,121,843 - Dshi_1094 0.46 -0.5
1,121,947 + Dshi_1094 0.56 -1.9
1,122,022 - Dshi_1094 0.64 +0.1
1,122,032 - Dshi_1094 0.65 -1.3
1,122,069 + Dshi_1094 0.68 -0.7
1,122,396 + -1.5
1,122,415 + +0.1
1,122,434 + +1.7
1,122,434 + +0.2
1,122,442 - -3.2
1,122,442 - +1.0
1,122,442 - +1.1
1,122,443 - +0.1
1,122,462 + +0.7
1,122,889 - Dshi_1095 0.26 -2.2
1,122,889 - Dshi_1095 0.26 -0.9
1,122,988 - Dshi_1095 0.32 +2.7
1,123,039 + Dshi_1095 0.36 +0.8
1,123,088 + Dshi_1095 0.39 +0.7
1,123,127 + Dshi_1095 0.42 -0.3
1,123,182 - Dshi_1095 0.45 -1.0
1,123,211 - Dshi_1095 0.47 -2.2
1,123,323 - Dshi_1095 0.55 -1.5
1,123,335 - Dshi_1095 0.55 -0.9

Or see this region's nucleotide sequence