Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0954

Experiment: m.b. 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0953 and Dshi_0954 are separated by 250 nucleotidesDshi_0954 and Dshi_0955 are separated by 36 nucleotidesDshi_0955 and Dshi_0956 overlap by 1 nucleotides Dshi_0953: Dshi_0953 - MATE efflux family protein (RefSeq), at 977,230 to 978,582 _0953 Dshi_0954: Dshi_0954 - GTP-binding protein YchF (RefSeq), at 978,833 to 979,930 _0954 Dshi_0955: Dshi_0955 - hydantoin racemase (RefSeq), at 979,967 to 980,662 _0955 Dshi_0956: Dshi_0956 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 980,662 to 981,948 _0956 Position (kb) 978 979 980Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 977.955 kb on + strand, within Dshi_0953at 977.994 kb on - strand, within Dshi_0953at 978.006 kb on + strand, within Dshi_0953at 978.020 kb on + strand, within Dshi_0953at 978.057 kb on - strand, within Dshi_0953at 978.080 kb on + strand, within Dshi_0953at 978.259 kb on + strand, within Dshi_0953at 978.329 kb on + strand, within Dshi_0953at 978.337 kb on - strand, within Dshi_0953at 978.337 kb on - strand, within Dshi_0953at 978.349 kb on + strand, within Dshi_0953at 978.378 kb on - strand, within Dshi_0953at 978.437 kb on + strand, within Dshi_0953at 978.437 kb on + strand, within Dshi_0953at 978.556 kb on + strandat 978.584 kb on + strandat 978.595 kb on - strandat 978.645 kb on + strandat 978.652 kb on - strandat 978.729 kb on - strandat 978.756 kb on + strandat 978.756 kb on + strandat 978.756 kb on + strandat 978.764 kb on - strandat 979.160 kb on - strand, within Dshi_0954at 979.930 kb on + strandat 980.187 kb on - strand, within Dshi_0955at 980.298 kb on + strand, within Dshi_0955at 980.301 kb on - strand, within Dshi_0955at 980.301 kb on - strand, within Dshi_0955at 980.419 kb on - strand, within Dshi_0955at 980.475 kb on - strand, within Dshi_0955at 980.553 kb on + strand, within Dshi_0955at 980.553 kb on + strand, within Dshi_0955at 980.587 kb on - strand, within Dshi_0955at 980.721 kb on + strandat 980.754 kb on - strandat 980.790 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
remove
977,955 + Dshi_0953 0.54 -0.4
977,994 - Dshi_0953 0.56 -0.2
978,006 + Dshi_0953 0.57 +1.0
978,020 + Dshi_0953 0.58 +1.4
978,057 - Dshi_0953 0.61 -0.8
978,080 + Dshi_0953 0.63 -1.7
978,259 + Dshi_0953 0.76 -1.2
978,329 + Dshi_0953 0.81 -0.3
978,337 - Dshi_0953 0.82 -2.7
978,337 - Dshi_0953 0.82 +0.4
978,349 + Dshi_0953 0.83 +0.2
978,378 - Dshi_0953 0.85 -1.0
978,437 + Dshi_0953 0.89 -0.8
978,437 + Dshi_0953 0.89 -0.1
978,556 + -0.6
978,584 + -1.6
978,595 - +1.2
978,645 + -0.5
978,652 - -1.1
978,729 - -0.4
978,756 + +3.5
978,756 + -0.3
978,756 + -1.3
978,764 - +0.3
979,160 - Dshi_0954 0.30 -3.0
979,930 + -0.6
980,187 - Dshi_0955 0.32 +0.9
980,298 + Dshi_0955 0.48 -2.1
980,301 - Dshi_0955 0.48 +1.2
980,301 - Dshi_0955 0.48 +2.2
980,419 - Dshi_0955 0.65 -1.8
980,475 - Dshi_0955 0.73 +1.6
980,553 + Dshi_0955 0.84 +0.3
980,553 + Dshi_0955 0.84 -0.1
980,587 - Dshi_0955 0.89 +0.2
980,721 + +0.2
980,754 - +0.7
980,790 + -0.6

Or see this region's nucleotide sequence