Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0490

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0490 and Dshi_0491 are separated by 142 nucleotides Dshi_0490: Dshi_0490 - hypothetical protein (RefSeq), at 475,571 to 475,996 _0490 Dshi_0491: Dshi_0491 - putative sulfonate/nitrate transport system substrate-binding protein (RefSeq), at 476,139 to 477,122 _0491 Position (kb) 475 476Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 474.575 kb on + strandat 474.575 kb on + strandat 474.575 kb on + strandat 474.575 kb on + strandat 474.583 kb on - strandat 474.583 kb on - strandat 474.583 kb on - strandat 474.611 kb on + strandat 474.614 kb on - strandat 474.615 kb on - strandat 474.651 kb on - strandat 474.651 kb on - strandat 474.676 kb on + strandat 474.678 kb on - strandat 474.694 kb on - strandat 474.696 kb on - strandat 474.696 kb on - strandat 474.699 kb on + strandat 474.707 kb on - strandat 474.707 kb on - strandat 474.707 kb on - strandat 474.707 kb on - strandat 474.710 kb on + strandat 474.718 kb on - strandat 474.723 kb on + strandat 474.765 kb on + strandat 474.768 kb on - strandat 474.768 kb on - strandat 474.771 kb on + strandat 474.778 kb on + strandat 474.792 kb on - strandat 474.799 kb on - strandat 474.801 kb on + strandat 474.806 kb on - strandat 474.809 kb on - strandat 474.811 kb on + strandat 474.816 kb on + strandat 474.816 kb on + strandat 474.826 kb on + strandat 474.826 kb on + strandat 474.827 kb on + strandat 474.837 kb on - strandat 474.852 kb on - strandat 474.860 kb on + strandat 474.875 kb on + strandat 474.880 kb on + strandat 474.883 kb on - strandat 474.908 kb on + strandat 474.910 kb on - strandat 474.916 kb on - strandat 474.916 kb on - strandat 474.922 kb on - strandat 474.922 kb on - strandat 474.939 kb on + strandat 474.939 kb on + strandat 474.945 kb on + strandat 474.945 kb on + strandat 474.947 kb on - strandat 474.953 kb on - strandat 474.953 kb on - strandat 474.967 kb on + strandat 474.967 kb on + strandat 474.975 kb on - strandat 474.977 kb on + strandat 474.983 kb on + strandat 474.985 kb on - strandat 474.991 kb on - strandat 474.998 kb on + strandat 475.004 kb on + strandat 475.014 kb on + strandat 475.014 kb on + strandat 475.014 kb on + strandat 475.022 kb on - strandat 475.022 kb on - strandat 475.044 kb on + strandat 475.066 kb on + strandat 475.074 kb on - strandat 475.074 kb on - strandat 475.110 kb on + strandat 475.146 kb on + strandat 475.147 kb on - strandat 475.154 kb on - strandat 475.154 kb on - strandat 475.154 kb on - strandat 475.166 kb on + strandat 475.222 kb on - strandat 475.234 kb on + strandat 475.251 kb on - strandat 475.306 kb on + strandat 475.306 kb on + strandat 475.314 kb on + strandat 475.314 kb on - strandat 475.324 kb on + strandat 475.324 kb on + strandat 475.324 kb on + strandat 475.327 kb on - strandat 475.332 kb on - strandat 475.391 kb on - strandat 475.474 kb on - strandat 475.474 kb on - strandat 475.512 kb on + strandat 475.515 kb on - strandat 475.515 kb on - strandat 475.537 kb on + strandat 475.538 kb on - strandat 475.549 kb on - strandat 475.564 kb on - strandat 475.573 kb on + strandat 475.592 kb on + strandat 475.803 kb on - strand, within Dshi_0490at 475.814 kb on - strand, within Dshi_0490at 475.865 kb on - strand, within Dshi_0490at 475.870 kb on - strand, within Dshi_0490at 475.936 kb on + strand, within Dshi_0490at 475.944 kb on - strand, within Dshi_0490at 475.955 kb on + strandat 475.957 kb on - strandat 476.013 kb on - strandat 476.018 kb on + strandat 476.185 kb on - strandat 476.274 kb on + strand, within Dshi_0491at 476.279 kb on + strand, within Dshi_0491at 476.340 kb on - strand, within Dshi_0491at 476.355 kb on - strand, within Dshi_0491at 476.367 kb on + strand, within Dshi_0491at 476.457 kb on - strand, within Dshi_0491at 476.475 kb on - strand, within Dshi_0491at 476.485 kb on - strand, within Dshi_0491at 476.586 kb on + strand, within Dshi_0491at 476.596 kb on + strand, within Dshi_0491at 476.604 kb on - strand, within Dshi_0491at 476.645 kb on + strand, within Dshi_0491at 476.711 kb on - strand, within Dshi_0491at 476.811 kb on - strand, within Dshi_0491at 476.836 kb on + strand, within Dshi_0491at 476.836 kb on + strand, within Dshi_0491at 476.923 kb on - strand, within Dshi_0491at 476.966 kb on - strand, within Dshi_0491

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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474,575 + -1.9
474,575 + -0.2
474,575 + -2.2
474,575 + -0.8
474,583 - -0.5
474,583 - -1.8
474,583 - -0.9
474,611 + +1.2
474,614 - -1.9
474,615 - -1.0
474,651 - -0.6
474,651 - -3.8
474,676 + +1.9
474,678 - +0.0
474,694 - +0.1
474,696 - +0.3
474,696 - +0.4
474,699 + -0.1
474,707 - -0.4
474,707 - -0.9
474,707 - -1.1
474,707 - -1.0
474,710 + -0.4
474,718 - -1.5
474,723 + -0.6
474,765 + +1.0
474,768 - -0.1
474,768 - -1.2
474,771 + +1.5
474,778 + +2.2
474,792 - +0.4
474,799 - -0.9
474,801 + -0.0
474,806 - -0.9
474,809 - +0.9
474,811 + -1.9
474,816 + -1.3
474,816 + +0.1
474,826 + -0.0
474,826 + -1.3
474,827 + +0.7
474,837 - +0.8
474,852 - -0.0
474,860 + -0.4
474,875 + -0.3
474,880 + +2.3
474,883 - +0.5
474,908 + -0.7
474,910 - -0.3
474,916 - -1.7
474,916 - +1.3
474,922 - +3.2
474,922 - +0.1
474,939 + -0.0
474,939 + +2.8
474,945 + -1.0
474,945 + +2.4
474,947 - +0.1
474,953 - -1.9
474,953 - -1.7
474,967 + +0.9
474,967 + +2.5
474,975 - -0.1
474,977 + -3.0
474,983 + -2.9
474,985 - -0.7
474,991 - -0.7
474,998 + +0.3
475,004 + -2.0
475,014 + +1.0
475,014 + +0.5
475,014 + +0.1
475,022 - -0.8
475,022 - -0.1
475,044 + +0.3
475,066 + -2.5
475,074 - -0.7
475,074 - -0.6
475,110 + -0.7
475,146 + -1.1
475,147 - +0.7
475,154 - +0.3
475,154 - +0.8
475,154 - +1.0
475,166 + -0.9
475,222 - +1.1
475,234 + -1.5
475,251 - -0.3
475,306 + -2.9
475,306 + +0.5
475,314 + -2.1
475,314 - -0.9
475,324 + +2.5
475,324 + -0.6
475,324 + -0.4
475,327 - -0.4
475,332 - -1.9
475,391 - -2.2
475,474 - -0.2
475,474 - -1.4
475,512 + -1.5
475,515 - -0.7
475,515 - +0.5
475,537 + +1.0
475,538 - -0.0
475,549 - -0.4
475,564 - -1.7
475,573 + +1.0
475,592 + -2.4
475,803 - Dshi_0490 0.54 -1.6
475,814 - Dshi_0490 0.57 +0.5
475,865 - Dshi_0490 0.69 +2.0
475,870 - Dshi_0490 0.70 +0.4
475,936 + Dshi_0490 0.86 +3.0
475,944 - Dshi_0490 0.88 +0.1
475,955 + +1.5
475,957 - -1.3
476,013 - -0.0
476,018 + +1.4
476,185 - +1.0
476,274 + Dshi_0491 0.14 -0.1
476,279 + Dshi_0491 0.14 -0.1
476,340 - Dshi_0491 0.20 +1.9
476,355 - Dshi_0491 0.22 +1.5
476,367 + Dshi_0491 0.23 +1.5
476,457 - Dshi_0491 0.32 +0.9
476,475 - Dshi_0491 0.34 -1.1
476,485 - Dshi_0491 0.35 +2.9
476,586 + Dshi_0491 0.45 -0.8
476,596 + Dshi_0491 0.46 -0.9
476,604 - Dshi_0491 0.47 -1.8
476,645 + Dshi_0491 0.51 -1.0
476,711 - Dshi_0491 0.58 -1.0
476,811 - Dshi_0491 0.68 +0.6
476,836 + Dshi_0491 0.71 +0.3
476,836 + Dshi_0491 0.71 -0.1
476,923 - Dshi_0491 0.80 +0.3
476,966 - Dshi_0491 0.84 +1.5

Or see this region's nucleotide sequence