Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0418

Experiment: m.b. 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0416 and Dshi_0417 are separated by 83 nucleotidesDshi_0417 and Dshi_0418 are separated by 74 nucleotidesDshi_0418 and Dshi_0419 are separated by 153 nucleotides Dshi_0416: Dshi_0416 - protein of unknown function DUF1127 (RefSeq), at 409,608 to 409,919 _0416 Dshi_0417: Dshi_0417 - hypothetical protein (RefSeq), at 410,003 to 410,209 _0417 Dshi_0418: Dshi_0418 - UspA domain protein (RefSeq), at 410,284 to 411,177 _0418 Dshi_0419: Dshi_0419 - major facilitator superfamily MFS_1 (RefSeq), at 411,331 to 412,584 _0419 Position (kb) 410 411 412Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 409.291 kb on - strandat 409.291 kb on - strandat 409.291 kb on - strandat 409.298 kb on - strandat 409.298 kb on - strandat 409.298 kb on - strandat 409.326 kb on + strandat 409.350 kb on + strandat 409.396 kb on + strandat 409.399 kb on + strandat 409.407 kb on + strandat 409.429 kb on + strandat 409.429 kb on + strandat 409.429 kb on + strandat 409.437 kb on - strandat 409.448 kb on - strandat 409.448 kb on - strandat 409.449 kb on + strandat 409.511 kb on + strandat 409.531 kb on - strandat 409.566 kb on + strandat 409.572 kb on - strandat 409.587 kb on - strandat 409.587 kb on - strandat 409.597 kb on - strandat 409.600 kb on - strandat 409.624 kb on - strandat 409.676 kb on - strand, within Dshi_0416at 409.680 kb on + strand, within Dshi_0416at 409.688 kb on - strand, within Dshi_0416at 409.688 kb on - strand, within Dshi_0416at 409.901 kb on - strandat 409.928 kb on - strandat 409.973 kb on + strandat 409.991 kb on - strandat 409.996 kb on - strandat 410.006 kb on - strandat 410.042 kb on + strand, within Dshi_0417at 410.044 kb on - strand, within Dshi_0417at 410.055 kb on - strand, within Dshi_0417at 410.067 kb on - strand, within Dshi_0417at 410.103 kb on - strand, within Dshi_0417at 410.109 kb on - strand, within Dshi_0417at 410.169 kb on - strand, within Dshi_0417at 410.326 kb on - strandat 410.328 kb on + strandat 410.336 kb on - strandat 410.461 kb on + strand, within Dshi_0418at 410.501 kb on + strand, within Dshi_0418at 410.509 kb on - strand, within Dshi_0418at 410.551 kb on - strand, within Dshi_0418at 410.648 kb on + strand, within Dshi_0418at 410.649 kb on + strand, within Dshi_0418at 410.708 kb on - strand, within Dshi_0418at 410.776 kb on + strand, within Dshi_0418at 410.791 kb on - strand, within Dshi_0418at 410.827 kb on + strand, within Dshi_0418at 410.835 kb on - strand, within Dshi_0418at 410.879 kb on + strand, within Dshi_0418at 411.024 kb on - strand, within Dshi_0418at 411.106 kb on + strandat 411.130 kb on + strandat 411.189 kb on + strandat 411.189 kb on + strandat 411.197 kb on + strandat 411.302 kb on - strandat 411.310 kb on - strandat 411.394 kb on - strandat 411.435 kb on + strandat 411.545 kb on + strand, within Dshi_0419at 411.549 kb on + strand, within Dshi_0419at 411.549 kb on + strand, within Dshi_0419at 411.590 kb on - strand, within Dshi_0419at 411.595 kb on + strand, within Dshi_0419at 411.599 kb on + strand, within Dshi_0419at 411.642 kb on + strand, within Dshi_0419at 411.710 kb on + strand, within Dshi_0419at 411.726 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.744 kb on + strand, within Dshi_0419at 411.745 kb on + strand, within Dshi_0419at 411.747 kb on - strand, within Dshi_0419at 411.752 kb on - strand, within Dshi_0419at 411.754 kb on - strand, within Dshi_0419at 411.756 kb on + strand, within Dshi_0419at 411.790 kb on - strand, within Dshi_0419at 411.805 kb on + strand, within Dshi_0419at 411.805 kb on + strand, within Dshi_0419at 411.808 kb on - strand, within Dshi_0419at 411.813 kb on - strand, within Dshi_0419at 411.854 kb on + strand, within Dshi_0419at 411.862 kb on - strand, within Dshi_0419at 411.862 kb on - strand, within Dshi_0419at 411.878 kb on + strand, within Dshi_0419at 411.878 kb on + strand, within Dshi_0419at 411.879 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.886 kb on - strand, within Dshi_0419at 411.894 kb on + strand, within Dshi_0419at 411.894 kb on + strand, within Dshi_0419at 411.902 kb on - strand, within Dshi_0419at 411.922 kb on + strand, within Dshi_0419at 411.977 kb on - strand, within Dshi_0419at 412.085 kb on + strand, within Dshi_0419at 412.116 kb on - strand, within Dshi_0419at 412.134 kb on + strand, within Dshi_0419at 412.134 kb on + strand, within Dshi_0419at 412.144 kb on - strand, within Dshi_0419at 412.163 kb on + strand, within Dshi_0419

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
remove
409,291 - -0.6
409,291 - -0.4
409,291 - -1.3
409,298 - -0.7
409,298 - -0.7
409,298 - +0.2
409,326 + +0.2
409,350 + +1.6
409,396 + -0.0
409,399 + -0.1
409,407 + +1.6
409,429 + -0.7
409,429 + +1.6
409,429 + -1.2
409,437 - -1.8
409,448 - -0.5
409,448 - -2.3
409,449 + -0.9
409,511 + -0.6
409,531 - +0.7
409,566 + +2.1
409,572 - -0.8
409,587 - -0.3
409,587 - -0.0
409,597 - -1.9
409,600 - +2.0
409,624 - -1.4
409,676 - Dshi_0416 0.22 +0.2
409,680 + Dshi_0416 0.23 -0.4
409,688 - Dshi_0416 0.26 -1.4
409,688 - Dshi_0416 0.26 +0.4
409,901 - +0.1
409,928 - -0.6
409,973 + +1.3
409,991 - +0.6
409,996 - +1.0
410,006 - -0.2
410,042 + Dshi_0417 0.19 -2.4
410,044 - Dshi_0417 0.20 -0.0
410,055 - Dshi_0417 0.25 -1.1
410,067 - Dshi_0417 0.31 -2.4
410,103 - Dshi_0417 0.48 -0.0
410,109 - Dshi_0417 0.51 +2.0
410,169 - Dshi_0417 0.80 +0.1
410,326 - -2.0
410,328 + -0.4
410,336 - +1.0
410,461 + Dshi_0418 0.20 -1.6
410,501 + Dshi_0418 0.24 -0.5
410,509 - Dshi_0418 0.25 -0.8
410,551 - Dshi_0418 0.30 -0.2
410,648 + Dshi_0418 0.41 -1.0
410,649 + Dshi_0418 0.41 +1.0
410,708 - Dshi_0418 0.47 -0.3
410,776 + Dshi_0418 0.55 -4.2
410,791 - Dshi_0418 0.57 +0.4
410,827 + Dshi_0418 0.61 +3.8
410,835 - Dshi_0418 0.62 -0.8
410,879 + Dshi_0418 0.67 -1.0
411,024 - Dshi_0418 0.83 -0.4
411,106 + -0.9
411,130 + -1.2
411,189 + -2.0
411,189 + +2.0
411,197 + +0.3
411,302 - +1.1
411,310 - -1.6
411,394 - -0.0
411,435 + -1.7
411,545 + Dshi_0419 0.17 +2.3
411,549 + Dshi_0419 0.17 +2.3
411,549 + Dshi_0419 0.17 -0.8
411,590 - Dshi_0419 0.21 -0.8
411,595 + Dshi_0419 0.21 +0.8
411,599 + Dshi_0419 0.21 -1.2
411,642 + Dshi_0419 0.25 -1.0
411,710 + Dshi_0419 0.30 -0.8
411,726 + Dshi_0419 0.31 +0.1
411,744 + Dshi_0419 0.33 -1.7
411,744 + Dshi_0419 0.33 +1.0
411,744 + Dshi_0419 0.33 +0.6
411,745 + Dshi_0419 0.33 -0.8
411,747 - Dshi_0419 0.33 -0.8
411,752 - Dshi_0419 0.34 +1.8
411,754 - Dshi_0419 0.34 -0.9
411,756 + Dshi_0419 0.34 +0.3
411,790 - Dshi_0419 0.37 -0.9
411,805 + Dshi_0419 0.38 -1.6
411,805 + Dshi_0419 0.38 -1.9
411,808 - Dshi_0419 0.38 +0.4
411,813 - Dshi_0419 0.38 +0.2
411,854 + Dshi_0419 0.42 +0.6
411,862 - Dshi_0419 0.42 -0.8
411,862 - Dshi_0419 0.42 -0.0
411,878 + Dshi_0419 0.44 +0.5
411,878 + Dshi_0419 0.44 -3.5
411,879 - Dshi_0419 0.44 -0.8
411,886 - Dshi_0419 0.44 +2.0
411,886 - Dshi_0419 0.44 -0.7
411,886 - Dshi_0419 0.44 -0.0
411,886 - Dshi_0419 0.44 -0.0
411,894 + Dshi_0419 0.45 -0.3
411,894 + Dshi_0419 0.45 +1.0
411,902 - Dshi_0419 0.46 +1.6
411,922 + Dshi_0419 0.47 -1.1
411,977 - Dshi_0419 0.52 +1.1
412,085 + Dshi_0419 0.60 +0.1
412,116 - Dshi_0419 0.63 -1.0
412,134 + Dshi_0419 0.64 +0.6
412,134 + Dshi_0419 0.64 -0.7
412,144 - Dshi_0419 0.65 -2.5
412,163 + Dshi_0419 0.66 -1.5

Or see this region's nucleotide sequence