Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0125 and Dshi_0126 are separated by 103 nucleotides Dshi_0126 and Dshi_0127 overlap by 4 nucleotides Dshi_0127 and Dshi_0128 are separated by 118 nucleotides
Dshi_0125: Dshi_0125 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 122,863 to 124,881
_0125
Dshi_0126: Dshi_0126 - hypothetical protein (RefSeq), at 124,985 to 125,401
_0126
Dshi_0127: Dshi_0127 - hypothetical protein (RefSeq), at 125,398 to 126,168
_0127
Dshi_0128: Dshi_0128 - hypothetical protein (RefSeq), at 126,287 to 126,946
_0128
Position (kb)
124
125
126 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 124.106 kb on + strand, within Dshi_0125 at 124.200 kb on + strand, within Dshi_0125 at 124.314 kb on - strand, within Dshi_0125 at 124.409 kb on - strand, within Dshi_0125 at 124.449 kb on + strand, within Dshi_0125 at 124.556 kb on + strand, within Dshi_0125 at 124.645 kb on - strand, within Dshi_0125 at 124.660 kb on - strand, within Dshi_0125 at 124.756 kb on - strand at 124.920 kb on + strand at 124.928 kb on - strand at 124.936 kb on - strand at 124.952 kb on - strand at 125.062 kb on - strand, within Dshi_0126 at 125.095 kb on + strand, within Dshi_0126 at 125.125 kb on - strand, within Dshi_0126 at 125.198 kb on + strand, within Dshi_0126 at 125.283 kb on - strand, within Dshi_0126 at 125.761 kb on - strand, within Dshi_0127 at 125.911 kb on + strand, within Dshi_0127 at 126.121 kb on - strand at 126.155 kb on - strand at 126.181 kb on + strand at 126.212 kb on - strand at 126.277 kb on - strand at 126.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 124,106 + Dshi_0125 0.62 +0.3 124,200 + Dshi_0125 0.66 +0.2 124,314 - Dshi_0125 0.72 +1.2 124,409 - Dshi_0125 0.77 -0.2 124,449 + Dshi_0125 0.79 -2.6 124,556 + Dshi_0125 0.84 +2.5 124,645 - Dshi_0125 0.88 -2.6 124,660 - Dshi_0125 0.89 +0.2 124,756 - +2.8 124,920 + +2.5 124,928 - -0.1 124,936 - +0.7 124,952 - +1.2 125,062 - Dshi_0126 0.18 -1.7 125,095 + Dshi_0126 0.26 -4.1 125,125 - Dshi_0126 0.34 -1.0 125,198 + Dshi_0126 0.51 +0.2 125,283 - Dshi_0126 0.71 +2.5 125,761 - Dshi_0127 0.47 -0.6 125,911 + Dshi_0127 0.67 -2.4 126,121 - +1.8 126,155 - -2.4 126,181 + -0.0 126,212 - -0.4 126,277 - +0.2 126,278 - -2.3
Or see this region's nucleotide sequence