Strain Fitness in Shewanella oneidensis MR-1 around SO0867

Experiment: ShewMM_MES_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0865 and SO0866 are separated by 14 nucleotidesSO0866 and SO0867 are separated by 449 nucleotidesSO0867 and SO0868 are separated by 57 nucleotidesSO0868 and panC are separated by 296 nucleotides SO0865: SO0865 - conserved hypothetical protein (NCBI ptt file), at 893,523 to 895,031 SO0865 SO0866: SO0866 - minor curlin subunit CsgB, putative (NCBI ptt file), at 895,046 to 895,465 SO0866 SO0867: SO0867 - serine protease, subtilase family (NCBI ptt file), at 895,915 to 898,371 SO0867 SO0868: SO0868 - hypothetical protein (NCBI ptt file), at 898,429 to 898,950 SO0868 SO0869: panC - pantoate--beta-alanine ligase (NCBI ptt file), at 899,247 to 900,092 panC Position (kb) 895 896 897 898 899Strain fitness (log2 ratio) -2 -1 0 1 2at 894.917 kb on - strandat 894.917 kb on - strandat 894.917 kb on - strandat 894.917 kb on - strandat 894.917 kb on - strandat 894.973 kb on - strandat 895.044 kb on + strandat 895.150 kb on + strand, within SO0866at 895.290 kb on + strand, within SO0866at 895.313 kb on - strand, within SO0866at 895.323 kb on - strand, within SO0866at 895.349 kb on + strand, within SO0866at 895.511 kb on + strandat 895.654 kb on + strandat 895.669 kb on + strandat 895.860 kb on + strandat 895.882 kb on + strandat 896.046 kb on - strandat 896.093 kb on + strandat 896.108 kb on + strandat 896.126 kb on - strandat 896.132 kb on + strandat 896.144 kb on + strandat 896.152 kb on - strandat 896.152 kb on - strandat 896.172 kb on + strand, within SO0867at 896.216 kb on + strand, within SO0867at 896.251 kb on + strand, within SO0867at 896.253 kb on + strand, within SO0867at 896.253 kb on + strand, within SO0867at 896.253 kb on + strand, within SO0867at 896.253 kb on + strand, within SO0867at 896.261 kb on - strand, within SO0867at 896.261 kb on - strand, within SO0867at 896.261 kb on - strand, within SO0867at 896.263 kb on + strand, within SO0867at 896.271 kb on - strand, within SO0867at 896.271 kb on - strand, within SO0867at 896.302 kb on + strand, within SO0867at 896.333 kb on - strand, within SO0867at 896.338 kb on - strand, within SO0867at 896.338 kb on - strand, within SO0867at 896.368 kb on + strand, within SO0867at 896.375 kb on - strand, within SO0867at 896.525 kb on + strand, within SO0867at 896.525 kb on + strand, within SO0867at 896.573 kb on + strand, within SO0867at 896.611 kb on + strand, within SO0867at 896.624 kb on + strand, within SO0867at 896.639 kb on + strand, within SO0867at 896.653 kb on + strand, within SO0867at 896.681 kb on + strand, within SO0867at 896.682 kb on + strand, within SO0867at 896.682 kb on + strand, within SO0867at 896.690 kb on - strand, within SO0867at 896.690 kb on - strand, within SO0867at 896.735 kb on + strand, within SO0867at 896.835 kb on + strand, within SO0867at 896.883 kb on - strand, within SO0867at 896.940 kb on - strand, within SO0867at 897.078 kb on + strand, within SO0867at 897.086 kb on - strand, within SO0867at 897.118 kb on + strand, within SO0867at 897.303 kb on - strand, within SO0867at 897.304 kb on + strand, within SO0867at 897.445 kb on - strand, within SO0867at 897.445 kb on - strand, within SO0867at 897.445 kb on - strand, within SO0867at 897.445 kb on - strand, within SO0867at 897.474 kb on + strand, within SO0867at 897.474 kb on + strand, within SO0867at 897.482 kb on - strand, within SO0867at 897.526 kb on - strand, within SO0867at 897.645 kb on + strand, within SO0867at 897.645 kb on + strand, within SO0867at 897.645 kb on + strand, within SO0867at 897.670 kb on + strand, within SO0867at 897.670 kb on + strand, within SO0867at 897.670 kb on + strand, within SO0867at 897.670 kb on + strand, within SO0867at 897.670 kb on + strand, within SO0867at 897.688 kb on - strand, within SO0867at 897.710 kb on + strand, within SO0867at 897.725 kb on + strand, within SO0867at 897.792 kb on + strand, within SO0867at 897.817 kb on + strand, within SO0867at 897.881 kb on - strand, within SO0867at 897.920 kb on + strand, within SO0867at 897.927 kb on - strand, within SO0867at 897.931 kb on + strand, within SO0867at 897.931 kb on + strand, within SO0867at 897.942 kb on + strand, within SO0867at 897.981 kb on - strand, within SO0867at 898.024 kb on + strand, within SO0867at 898.030 kb on + strand, within SO0867at 898.030 kb on + strand, within SO0867at 898.030 kb on + strand, within SO0867at 898.038 kb on - strand, within SO0867at 898.038 kb on - strand, within SO0867at 898.055 kb on - strand, within SO0867at 898.059 kb on + strand, within SO0867at 898.059 kb on + strand, within SO0867at 898.067 kb on - strand, within SO0867at 898.067 kb on - strand, within SO0867at 898.089 kb on + strand, within SO0867at 898.097 kb on - strand, within SO0867at 898.097 kb on - strand, within SO0867at 898.109 kb on + strand, within SO0867at 898.159 kb on + strandat 898.197 kb on + strandat 898.202 kb on + strandat 898.205 kb on - strandat 898.205 kb on - strandat 898.298 kb on + strandat 898.298 kb on + strandat 898.298 kb on + strandat 898.306 kb on - strandat 898.310 kb on + strandat 898.310 kb on + strandat 898.328 kb on - strandat 898.365 kb on + strandat 898.365 kb on + strandat 898.365 kb on + strandat 898.365 kb on + strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.497 kb on - strand, within SO0868at 898.635 kb on + strand, within SO0868at 898.642 kb on - strand, within SO0868at 898.680 kb on + strand, within SO0868at 898.681 kb on - strand, within SO0868at 898.688 kb on - strand, within SO0868at 898.897 kb on - strand, within SO0868at 898.907 kb on - strandat 898.917 kb on - strandat 898.987 kb on - strandat 899.164 kb on + strandat 899.198 kb on - strandat 899.198 kb on - strandat 899.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ShewMM_MES_buffer
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894,917 - -0.1
894,917 - -0.3
894,917 - +0.9
894,917 - +0.1
894,917 - +0.5
894,973 - -0.3
895,044 + +0.0
895,150 + SO0866 0.25 -1.2
895,290 + SO0866 0.58 +0.4
895,313 - SO0866 0.64 +0.5
895,323 - SO0866 0.66 -0.1
895,349 + SO0866 0.72 +0.6
895,511 + +0.1
895,654 + -0.2
895,669 + +0.8
895,860 + -1.9
895,882 + +0.1
896,046 - -0.1
896,093 + -0.4
896,108 + +0.9
896,126 - +0.0
896,132 + -0.5
896,144 + -0.0
896,152 - -1.1
896,152 - -0.4
896,172 + SO0867 0.10 -0.5
896,216 + SO0867 0.12 -0.2
896,251 + SO0867 0.14 +0.9
896,253 + SO0867 0.14 -0.2
896,253 + SO0867 0.14 -0.6
896,253 + SO0867 0.14 +1.9
896,253 + SO0867 0.14 -0.3
896,261 - SO0867 0.14 +0.2
896,261 - SO0867 0.14 +0.1
896,261 - SO0867 0.14 +0.1
896,263 + SO0867 0.14 +0.3
896,271 - SO0867 0.14 -0.1
896,271 - SO0867 0.14 -0.4
896,302 + SO0867 0.16 -0.4
896,333 - SO0867 0.17 -0.8
896,338 - SO0867 0.17 +1.0
896,338 - SO0867 0.17 +1.1
896,368 + SO0867 0.18 +1.1
896,375 - SO0867 0.19 +1.2
896,525 + SO0867 0.25 +1.2
896,525 + SO0867 0.25 -0.2
896,573 + SO0867 0.27 -0.1
896,611 + SO0867 0.28 -0.0
896,624 + SO0867 0.29 +0.1
896,639 + SO0867 0.29 +0.9
896,653 + SO0867 0.30 +0.3
896,681 + SO0867 0.31 +0.3
896,682 + SO0867 0.31 +0.5
896,682 + SO0867 0.31 +1.0
896,690 - SO0867 0.32 +0.5
896,690 - SO0867 0.32 +0.5
896,735 + SO0867 0.33 +0.2
896,835 + SO0867 0.37 +1.2
896,883 - SO0867 0.39 -0.1
896,940 - SO0867 0.42 -0.4
897,078 + SO0867 0.47 -1.0
897,086 - SO0867 0.48 +0.1
897,118 + SO0867 0.49 -0.5
897,303 - SO0867 0.56 -0.4
897,304 + SO0867 0.57 +0.5
897,445 - SO0867 0.62 +0.8
897,445 - SO0867 0.62 +0.2
897,445 - SO0867 0.62 +0.1
897,445 - SO0867 0.62 +0.2
897,474 + SO0867 0.63 +0.5
897,474 + SO0867 0.63 +0.4
897,482 - SO0867 0.64 -0.3
897,526 - SO0867 0.66 +1.3
897,645 + SO0867 0.70 +0.8
897,645 + SO0867 0.70 +0.7
897,645 + SO0867 0.70 -1.0
897,670 + SO0867 0.71 -0.3
897,670 + SO0867 0.71 +0.6
897,670 + SO0867 0.71 +0.1
897,670 + SO0867 0.71 +0.1
897,670 + SO0867 0.71 -0.3
897,688 - SO0867 0.72 -0.1
897,710 + SO0867 0.73 -1.8
897,725 + SO0867 0.74 +0.4
897,792 + SO0867 0.76 +1.4
897,817 + SO0867 0.77 +0.3
897,881 - SO0867 0.80 +0.0
897,920 + SO0867 0.82 +0.7
897,927 - SO0867 0.82 +0.5
897,931 + SO0867 0.82 +2.1
897,931 + SO0867 0.82 +0.2
897,942 + SO0867 0.82 -0.2
897,981 - SO0867 0.84 -0.1
898,024 + SO0867 0.86 -0.5
898,030 + SO0867 0.86 +0.0
898,030 + SO0867 0.86 +0.1
898,030 + SO0867 0.86 +0.1
898,038 - SO0867 0.86 +0.7
898,038 - SO0867 0.86 +0.5
898,055 - SO0867 0.87 +0.4
898,059 + SO0867 0.87 -0.5
898,059 + SO0867 0.87 +0.1
898,067 - SO0867 0.88 +0.0
898,067 - SO0867 0.88 -0.3
898,089 + SO0867 0.88 -0.9
898,097 - SO0867 0.89 +0.1
898,097 - SO0867 0.89 +1.3
898,109 + SO0867 0.89 +0.7
898,159 + +1.0
898,197 + +0.4
898,202 + +0.0
898,205 - +0.2
898,205 - +0.0
898,298 + -0.6
898,298 + +0.7
898,298 + -1.3
898,306 - -0.2
898,310 + -0.3
898,310 + +0.2
898,328 - -0.3
898,365 + -0.6
898,365 + -0.5
898,365 + +0.0
898,365 + -0.3
898,373 - -0.2
898,373 - -0.5
898,373 - +0.0
898,373 - +0.3
898,373 - +0.3
898,373 - +0.9
898,373 - +0.3
898,373 - +0.4
898,497 - SO0868 0.13 -0.1
898,635 + SO0868 0.39 +0.1
898,642 - SO0868 0.41 +0.8
898,680 + SO0868 0.48 +0.2
898,681 - SO0868 0.48 -0.5
898,688 - SO0868 0.50 -0.3
898,897 - SO0868 0.90 +0.3
898,907 - -0.9
898,917 - -0.4
898,987 - +0.5
899,164 + +0.3
899,198 - +0.4
899,198 - +0.2
899,198 - +0.3

Or see this region's nucleotide sequence