Experiment: ShewMM_MES_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0856 and SO0857 are separated by 1 nucleotides SO0857 and SO0858 are separated by 654 nucleotides
SO0856: SO0856 - conserved hypothetical protein (NCBI ptt file), at 877,195 to 879,888
SO0856
SO0857: SO0857 - ABC transporter, ATP-binding protein (NCBI ptt file), at 879,890 to 880,561
SO0857
SO0858: SO0858 - sodium:alanine symporter family protein (NCBI ptt file), at 881,216 to 882,574
SO0858
Position (kb) 879
880
881 Strain fitness (log2 ratio) -1
0
1 at 878.891 kb on - strand, within SO0856 at 878.955 kb on + strand, within SO0856 at 879.093 kb on + strand, within SO0856 at 879.148 kb on - strand, within SO0856 at 879.289 kb on + strand, within SO0856 at 879.294 kb on + strand, within SO0856 at 879.370 kb on + strand, within SO0856 at 879.378 kb on - strand, within SO0856 at 879.378 kb on - strand, within SO0856 at 879.393 kb on + strand, within SO0856 at 879.418 kb on - strand, within SO0856 at 879.469 kb on + strand, within SO0856 at 879.573 kb on + strand, within SO0856 at 879.581 kb on - strand, within SO0856 at 879.581 kb on - strand, within SO0856 at 879.626 kb on - strand at 879.658 kb on - strand at 879.658 kb on - strand at 879.718 kb on - strand at 879.763 kb on + strand at 879.912 kb on + strand at 879.938 kb on + strand at 879.945 kb on - strand at 880.012 kb on + strand, within SO0857 at 880.025 kb on - strand, within SO0857 at 880.148 kb on - strand, within SO0857 at 880.212 kb on - strand, within SO0857 at 880.318 kb on - strand, within SO0857 at 880.358 kb on + strand, within SO0857 at 880.366 kb on - strand, within SO0857 at 880.386 kb on + strand, within SO0857 at 880.386 kb on + strand, within SO0857 at 880.455 kb on + strand, within SO0857 at 880.463 kb on - strand, within SO0857 at 880.497 kb on + strand at 880.497 kb on + strand at 880.497 kb on + strand at 880.497 kb on + strand at 880.500 kb on - strand at 880.505 kb on - strand at 880.505 kb on - strand at 880.643 kb on - strand at 880.668 kb on + strand at 880.681 kb on + strand at 880.750 kb on - strand at 880.752 kb on + strand at 880.828 kb on + strand at 880.830 kb on - strand at 880.922 kb on + strand at 880.947 kb on + strand at 881.039 kb on + strand at 881.054 kb on - strand at 881.241 kb on + strand at 881.343 kb on + strand at 881.420 kb on - strand, within SO0858
Per-strain Table
Position Strand Gene LocusTag Fraction ShewMM_MES_buffer remove 878,891 - SO0856 0.63 +0.7 878,955 + SO0856 0.65 -0.3 879,093 + SO0856 0.70 +0.5 879,148 - SO0856 0.72 +0.3 879,289 + SO0856 0.78 +0.1 879,294 + SO0856 0.78 -0.2 879,370 + SO0856 0.81 -1.2 879,378 - SO0856 0.81 -0.8 879,378 - SO0856 0.81 -0.3 879,393 + SO0856 0.82 +0.9 879,418 - SO0856 0.83 -0.2 879,469 + SO0856 0.84 +0.5 879,573 + SO0856 0.88 -0.5 879,581 - SO0856 0.89 +0.1 879,581 - SO0856 0.89 -0.8 879,626 - +0.2 879,658 - -1.3 879,658 - -0.2 879,718 - +0.7 879,763 + -0.5 879,912 + +0.0 879,938 + +0.3 879,945 - -0.0 880,012 + SO0857 0.18 -0.3 880,025 - SO0857 0.20 -0.6 880,148 - SO0857 0.38 -0.9 880,212 - SO0857 0.48 -0.1 880,318 - SO0857 0.64 -0.4 880,358 + SO0857 0.70 -0.1 880,366 - SO0857 0.71 -1.1 880,386 + SO0857 0.74 +0.3 880,386 + SO0857 0.74 -0.7 880,455 + SO0857 0.84 -0.7 880,463 - SO0857 0.85 +0.5 880,497 + +0.3 880,497 + +0.6 880,497 + -0.6 880,497 + -0.6 880,500 - +1.2 880,505 - +0.4 880,505 - -0.5 880,643 - +1.0 880,668 + +0.8 880,681 + +0.0 880,750 - +0.9 880,752 + -0.3 880,828 + +0.0 880,830 - +0.9 880,922 + +1.2 880,947 + +0.3 881,039 + -1.3 881,054 - +0.3 881,241 + -0.2 881,343 + +0.0 881,420 - SO0858 0.15 +0.3
Or see this region's nucleotide sequence