Experiment: ShewMM_MES_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0715 and SO0716 overlap by 1 nucleotides SO0716 and SO0717 overlap by 4 nucleotides SO0717 and SO0718 are separated by 94 nucleotides SO0718 and SO0719 are separated by 140 nucleotides
SO0715: SO0715 - oxidoreductase, molybdopterin-binding (NCBI ptt file), at 731,746 to 732,972
SO0715
SO0716: SO0716 - monoheme cytochrome c, putative (NCBI ptt file), at 732,972 to 733,355
SO0716
SO0717: SO0717 - monoheme cytochrome c (NCBI ptt file), at 733,352 to 733,687
SO0717
SO0718: SO0718 - conserved hypothetical protein (NCBI ptt file), at 733,782 to 734,261
SO0718
SO0719: SO0719 - TonB-dependent receptor, putative (NCBI ptt file), at 734,402 to 736,645
SO0719
Position (kb) 733
734 Strain fitness (log2 ratio) -1
0
1
2 at 732.353 kb on + strand, within SO0715 at 732.363 kb on - strand, within SO0715 at 732.419 kb on + strand, within SO0715 at 732.419 kb on + strand, within SO0715 at 732.434 kb on + strand, within SO0715 at 732.442 kb on - strand, within SO0715 at 732.517 kb on + strand, within SO0715 at 732.525 kb on - strand, within SO0715 at 732.664 kb on + strand, within SO0715 at 732.685 kb on - strand, within SO0715 at 732.691 kb on - strand, within SO0715 at 732.705 kb on - strand, within SO0715 at 732.839 kb on + strand, within SO0715 at 732.883 kb on + strand at 732.891 kb on - strand at 732.933 kb on + strand at 732.933 kb on + strand at 732.941 kb on - strand at 732.958 kb on - strand at 732.964 kb on - strand at 733.010 kb on + strand at 733.170 kb on + strand, within SO0716 at 733.219 kb on + strand, within SO0716 at 733.227 kb on - strand, within SO0716 at 733.241 kb on + strand, within SO0716 at 733.271 kb on + strand, within SO0716 at 733.271 kb on + strand, within SO0716 at 733.283 kb on + strand, within SO0716 at 733.450 kb on + strand, within SO0717 at 733.457 kb on + strand, within SO0717 at 733.468 kb on - strand, within SO0717 at 733.571 kb on + strand, within SO0717 at 733.603 kb on + strand, within SO0717 at 733.645 kb on + strand, within SO0717 at 733.645 kb on + strand, within SO0717 at 733.645 kb on + strand, within SO0717 at 733.653 kb on - strand, within SO0717 at 733.655 kb on + strand at 733.655 kb on + strand at 733.677 kb on + strand at 733.750 kb on - strand at 733.855 kb on + strand, within SO0718 at 733.900 kb on - strand, within SO0718 at 733.909 kb on + strand, within SO0718 at 733.919 kb on + strand, within SO0718 at 733.919 kb on + strand, within SO0718 at 733.927 kb on - strand, within SO0718 at 733.927 kb on - strand, within SO0718 at 733.927 kb on - strand, within SO0718 at 733.975 kb on + strand, within SO0718 at 733.975 kb on + strand, within SO0718 at 733.977 kb on + strand, within SO0718 at 733.985 kb on - strand, within SO0718 at 733.994 kb on + strand, within SO0718 at 734.081 kb on + strand, within SO0718 at 734.089 kb on - strand, within SO0718 at 734.106 kb on - strand, within SO0718 at 734.106 kb on - strand, within SO0718 at 734.137 kb on + strand, within SO0718 at 734.189 kb on + strand, within SO0718 at 734.191 kb on + strand, within SO0718 at 734.201 kb on + strand, within SO0718 at 734.234 kb on + strand at 734.234 kb on + strand at 734.234 kb on + strand at 734.234 kb on + strand at 734.236 kb on + strand at 734.271 kb on - strand at 734.290 kb on - strand at 734.323 kb on + strand at 734.323 kb on + strand at 734.331 kb on - strand at 734.331 kb on - strand at 734.331 kb on - strand at 734.433 kb on - strand at 734.450 kb on - strand at 734.475 kb on + strand at 734.595 kb on - strand at 734.608 kb on - strand at 734.624 kb on + strand at 734.624 kb on + strand at 734.632 kb on - strand, within SO0719 at 734.632 kb on - strand, within SO0719
Per-strain Table
Position Strand Gene LocusTag Fraction ShewMM_MES_buffer remove 732,353 + SO0715 0.49 -0.0 732,363 - SO0715 0.50 +0.2 732,419 + SO0715 0.55 -0.3 732,419 + SO0715 0.55 -0.9 732,434 + SO0715 0.56 -0.2 732,442 - SO0715 0.57 -0.0 732,517 + SO0715 0.63 -0.0 732,525 - SO0715 0.63 -0.3 732,664 + SO0715 0.75 -0.5 732,685 - SO0715 0.77 +0.0 732,691 - SO0715 0.77 +1.2 732,705 - SO0715 0.78 -0.4 732,839 + SO0715 0.89 -0.3 732,883 + +0.7 732,891 - +2.2 732,933 + +0.2 732,933 + -0.4 732,941 - +0.2 732,958 - -0.3 732,964 - -0.4 733,010 + -0.2 733,170 + SO0716 0.52 +0.4 733,219 + SO0716 0.64 +0.6 733,227 - SO0716 0.66 -0.4 733,241 + SO0716 0.70 -0.3 733,271 + SO0716 0.78 -0.4 733,271 + SO0716 0.78 -0.3 733,283 + SO0716 0.81 -0.6 733,450 + SO0717 0.29 -0.6 733,457 + SO0717 0.31 -0.5 733,468 - SO0717 0.35 -0.4 733,571 + SO0717 0.65 +0.1 733,603 + SO0717 0.75 -0.2 733,645 + SO0717 0.87 -0.4 733,645 + SO0717 0.87 -0.7 733,645 + SO0717 0.87 -0.5 733,653 - SO0717 0.90 -0.7 733,655 + +0.9 733,655 + +0.2 733,677 + +0.6 733,750 - +1.2 733,855 + SO0718 0.15 -0.4 733,900 - SO0718 0.25 -0.1 733,909 + SO0718 0.26 +0.4 733,919 + SO0718 0.29 +0.1 733,919 + SO0718 0.29 -0.8 733,927 - SO0718 0.30 +0.3 733,927 - SO0718 0.30 +1.0 733,927 - SO0718 0.30 +0.5 733,975 + SO0718 0.40 +0.7 733,975 + SO0718 0.40 -0.5 733,977 + SO0718 0.41 +0.8 733,985 - SO0718 0.42 -0.2 733,994 + SO0718 0.44 -0.8 734,081 + SO0718 0.62 +0.6 734,089 - SO0718 0.64 -0.0 734,106 - SO0718 0.68 +0.5 734,106 - SO0718 0.68 -0.2 734,137 + SO0718 0.74 +0.3 734,189 + SO0718 0.85 +0.4 734,191 + SO0718 0.85 -0.0 734,201 + SO0718 0.87 -0.4 734,234 + +1.0 734,234 + -0.3 734,234 + -0.1 734,234 + +0.4 734,236 + -0.4 734,271 - -1.0 734,290 - +0.2 734,323 + +0.4 734,323 + +0.0 734,331 - +0.1 734,331 - +0.2 734,331 - +0.4 734,433 - +0.1 734,450 - -0.1 734,475 + +0.1 734,595 - +0.5 734,608 - +0.6 734,624 + -0.1 734,624 + -0.4 734,632 - SO0719 0.10 +0.5 734,632 - SO0719 0.10 -0.1
Or see this region's nucleotide sequence