Strain Fitness in Shewanella oneidensis MR-1 around SO0281

Experiment: ShewMM_MES_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmrcA and SO0281 are separated by 189 nucleotidesSO0281 and SO0282 overlap by 13 nucleotidesSO0282 and SO0283 overlap by 4 nucleotides SO0280: mrcA - penicillin-binding protein 1A (NCBI ptt file), at 286,053 to 288,572 mrcA SO0281: SO0281 - type IV pilus biogenesis protein PilM (NCBI ptt file), at 288,762 to 289,841 SO0281 SO0282: SO0282 - type IV pilus biogenesis protein PilN (NCBI ptt file), at 289,829 to 290,413 SO0282 SO0283: SO0283 - type IV pilus biogenesis protein PilO (NCBI ptt file), at 290,410 to 291,030 SO0283 Position (kb) 288 289 290Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 288.616 kb on - strandat 288.631 kb on - strandat 288.631 kb on - strandat 288.650 kb on + strandat 288.722 kb on - strandat 288.805 kb on + strandat 288.845 kb on + strandat 288.845 kb on + strandat 288.845 kb on + strandat 288.952 kb on + strand, within SO0281at 288.960 kb on - strand, within SO0281at 289.042 kb on - strand, within SO0281at 289.103 kb on + strand, within SO0281at 289.190 kb on + strand, within SO0281at 289.190 kb on + strand, within SO0281at 289.193 kb on - strand, within SO0281at 289.193 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.203 kb on - strand, within SO0281at 289.223 kb on - strand, within SO0281at 289.272 kb on + strand, within SO0281at 289.279 kb on + strand, within SO0281at 289.280 kb on - strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.311 kb on - strand, within SO0281at 289.332 kb on + strand, within SO0281at 289.338 kb on - strand, within SO0281at 289.392 kb on + strand, within SO0281at 289.410 kb on + strand, within SO0281at 289.410 kb on + strand, within SO0281at 289.422 kb on + strand, within SO0281at 289.428 kb on + strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.454 kb on + strand, within SO0281at 289.550 kb on - strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.662 kb on + strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.669 kb on - strand, within SO0281at 289.669 kb on - strand, within SO0281at 289.701 kb on + strand, within SO0281at 289.701 kb on + strand, within SO0281at 289.708 kb on + strand, within SO0281at 289.708 kb on + strand, within SO0281at 289.731 kb on + strand, within SO0281at 289.733 kb on + strand, within SO0281at 289.733 kb on - strand, within SO0281at 289.749 kb on - strandat 289.787 kb on + strandat 289.791 kb on - strandat 289.797 kb on + strandat 289.804 kb on + strandat 289.805 kb on - strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.812 kb on - strandat 289.812 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.832 kb on - strandat 289.836 kb on + strandat 289.836 kb on + strandat 289.837 kb on + strandat 289.864 kb on + strandat 289.884 kb on - strandat 289.928 kb on - strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.941 kb on - strand, within SO0282at 289.946 kb on - strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 290.002 kb on + strand, within SO0282at 290.002 kb on + strand, within SO0282at 290.135 kb on + strand, within SO0282at 290.156 kb on - strand, within SO0282at 290.163 kb on + strand, within SO0282at 290.167 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.218 kb on + strand, within SO0282at 290.218 kb on + strand, within SO0282at 290.238 kb on + strand, within SO0282at 290.238 kb on - strand, within SO0282at 290.250 kb on + strand, within SO0282at 290.256 kb on + strand, within SO0282at 290.258 kb on + strand, within SO0282at 290.258 kb on - strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on - strand, within SO0282at 290.266 kb on - strand, within SO0282at 290.266 kb on - strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.273 kb on - strand, within SO0282at 290.275 kb on - strand, within SO0282at 290.282 kb on + strand, within SO0282at 290.282 kb on - strand, within SO0282at 290.291 kb on + strand, within SO0282at 290.303 kb on - strand, within SO0282at 290.318 kb on + strand, within SO0282at 290.327 kb on - strand, within SO0282at 290.327 kb on - strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.355 kb on + strandat 290.378 kb on - strandat 290.378 kb on - strandat 290.420 kb on + strandat 290.428 kb on - strandat 290.428 kb on - strandat 290.428 kb on - strandat 290.474 kb on - strand, within SO0283at 290.533 kb on + strand, within SO0283at 290.536 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.577 kb on - strand, within SO0283at 290.581 kb on + strand, within SO0283at 290.581 kb on + strand, within SO0283at 290.584 kb on - strand, within SO0283at 290.597 kb on - strand, within SO0283at 290.630 kb on + strand, within SO0283at 290.630 kb on + strand, within SO0283at 290.631 kb on + strand, within SO0283at 290.631 kb on + strand, within SO0283at 290.637 kb on + strand, within SO0283at 290.638 kb on - strand, within SO0283at 290.638 kb on - strand, within SO0283at 290.639 kb on - strand, within SO0283at 290.642 kb on + strand, within SO0283at 290.650 kb on + strand, within SO0283at 290.731 kb on + strand, within SO0283at 290.733 kb on - strand, within SO0283at 290.760 kb on - strand, within SO0283at 290.766 kb on + strand, within SO0283at 290.766 kb on - strand, within SO0283at 290.825 kb on - strand, within SO0283

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Per-strain Table

Position Strand Gene LocusTag Fraction ShewMM_MES_buffer
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288,616 - +0.7
288,631 - +0.1
288,631 - +0.0
288,650 + -0.8
288,722 - +0.1
288,805 + +0.3
288,845 + +0.5
288,845 + +0.1
288,845 + -0.4
288,952 + SO0281 0.18 +0.4
288,960 - SO0281 0.18 -0.1
289,042 - SO0281 0.26 +2.6
289,103 + SO0281 0.32 +1.1
289,190 + SO0281 0.40 +0.3
289,190 + SO0281 0.40 +0.4
289,193 - SO0281 0.40 -0.2
289,193 - SO0281 0.40 -0.5
289,198 - SO0281 0.40 +0.2
289,198 - SO0281 0.40 +0.5
289,198 - SO0281 0.40 +0.0
289,198 - SO0281 0.40 +0.4
289,198 - SO0281 0.40 -0.9
289,203 - SO0281 0.41 +0.2
289,223 - SO0281 0.43 +1.7
289,272 + SO0281 0.47 +0.6
289,279 + SO0281 0.48 +0.6
289,280 - SO0281 0.48 +0.4
289,284 + SO0281 0.48 +0.9
289,284 + SO0281 0.48 +1.5
289,284 + SO0281 0.48 -0.0
289,311 - SO0281 0.51 +0.2
289,332 + SO0281 0.53 -1.3
289,338 - SO0281 0.53 +0.6
289,392 + SO0281 0.58 -0.3
289,410 + SO0281 0.60 -0.1
289,410 + SO0281 0.60 +0.1
289,422 + SO0281 0.61 -0.3
289,428 + SO0281 0.62 -0.2
289,436 - SO0281 0.62 -0.3
289,436 - SO0281 0.62 +0.3
289,436 - SO0281 0.62 +1.2
289,454 + SO0281 0.64 -0.2
289,550 - SO0281 0.73 -0.2
289,654 + SO0281 0.83 +1.3
289,654 + SO0281 0.83 -0.1
289,654 + SO0281 0.83 +0.2
289,654 + SO0281 0.83 +0.4
289,662 + SO0281 0.83 -0.3
289,662 - SO0281 0.83 +0.4
289,662 - SO0281 0.83 +1.0
289,662 - SO0281 0.83 -0.4
289,662 - SO0281 0.83 +0.5
289,669 - SO0281 0.84 +0.0
289,669 - SO0281 0.84 -1.0
289,701 + SO0281 0.87 -0.1
289,701 + SO0281 0.87 -0.4
289,708 + SO0281 0.88 -0.5
289,708 + SO0281 0.88 +0.4
289,731 + SO0281 0.90 +0.4
289,733 + SO0281 0.90 -0.2
289,733 - SO0281 0.90 -0.0
289,749 - +0.2
289,787 + -0.2
289,791 - +0.5
289,797 + +0.5
289,804 + +0.1
289,805 - -0.4
289,809 + -0.2
289,809 + +0.5
289,809 + -1.0
289,809 + +0.2
289,812 - -1.0
289,812 - -0.2
289,817 - +1.6
289,817 - +0.4
289,817 - -0.0
289,817 - +0.3
289,832 - -0.1
289,836 + -3.9
289,836 + +0.1
289,837 + +0.0
289,864 + -0.1
289,884 - +0.4
289,928 - SO0282 0.17 +0.3
289,938 + SO0282 0.19 +1.3
289,938 + SO0282 0.19 +0.4
289,938 + SO0282 0.19 -0.4
289,938 + SO0282 0.19 +0.4
289,941 - SO0282 0.19 +0.4
289,946 - SO0282 0.20 +0.3
289,968 + SO0282 0.24 +0.5
289,968 + SO0282 0.24 +0.3
289,968 + SO0282 0.24 +0.1
289,968 + SO0282 0.24 -0.6
289,976 - SO0282 0.25 -0.9
289,976 - SO0282 0.25 -0.6
289,976 - SO0282 0.25 -0.8
289,976 - SO0282 0.25 -1.4
289,976 - SO0282 0.25 +0.1
289,976 - SO0282 0.25 +0.8
290,002 + SO0282 0.30 -0.4
290,002 + SO0282 0.30 -1.2
290,135 + SO0282 0.52 +0.1
290,156 - SO0282 0.56 -2.2
290,163 + SO0282 0.57 +0.8
290,167 - SO0282 0.58 -0.3
290,171 - SO0282 0.58 -0.1
290,171 - SO0282 0.58 -1.2
290,171 - SO0282 0.58 -1.1
290,171 - SO0282 0.58 +2.6
290,218 + SO0282 0.66 +0.7
290,218 + SO0282 0.66 +0.4
290,238 + SO0282 0.70 -0.0
290,238 - SO0282 0.70 -0.6
290,250 + SO0282 0.72 -0.0
290,256 + SO0282 0.73 +0.4
290,258 + SO0282 0.73 -0.0
290,258 - SO0282 0.73 -1.0
290,265 + SO0282 0.75 +0.5
290,265 + SO0282 0.75 +0.6
290,265 + SO0282 0.75 -0.6
290,265 + SO0282 0.75 -0.4
290,265 + SO0282 0.75 +0.1
290,265 - SO0282 0.75 -0.5
290,266 - SO0282 0.75 -0.6
290,266 - SO0282 0.75 -0.4
290,272 + SO0282 0.76 +0.4
290,272 + SO0282 0.76 +0.8
290,272 + SO0282 0.76 +0.5
290,273 - SO0282 0.76 -0.6
290,275 - SO0282 0.76 +0.2
290,282 + SO0282 0.77 -0.4
290,282 - SO0282 0.77 -0.5
290,291 + SO0282 0.79 +1.0
290,303 - SO0282 0.81 -0.4
290,318 + SO0282 0.84 +0.1
290,327 - SO0282 0.85 -0.4
290,327 - SO0282 0.85 +0.7
290,343 + SO0282 0.88 -0.0
290,343 + SO0282 0.88 -0.4
290,343 + SO0282 0.88 -0.0
290,343 + SO0282 0.88 -0.8
290,343 + SO0282 0.88 +1.6
290,343 + SO0282 0.88 +0.1
290,343 + SO0282 0.88 +0.4
290,343 + SO0282 0.88 +0.6
290,351 - SO0282 0.89 -0.0
290,351 - SO0282 0.89 +0.0
290,351 - SO0282 0.89 -0.3
290,351 - SO0282 0.89 -0.3
290,351 - SO0282 0.89 +0.6
290,351 - SO0282 0.89 +0.6
290,351 - SO0282 0.89 +0.1
290,355 + -0.0
290,378 - +0.4
290,378 - +0.3
290,420 + +0.0
290,428 - +0.5
290,428 - +0.5
290,428 - -0.3
290,474 - SO0283 0.10 -0.3
290,533 + SO0283 0.20 +0.1
290,536 - SO0283 0.20 -0.6
290,567 - SO0283 0.25 +0.8
290,567 - SO0283 0.25 -0.9
290,567 - SO0283 0.25 -0.6
290,577 - SO0283 0.27 -0.4
290,581 + SO0283 0.28 +0.0
290,581 + SO0283 0.28 +0.9
290,584 - SO0283 0.28 +1.7
290,597 - SO0283 0.30 -0.3
290,630 + SO0283 0.35 -0.2
290,630 + SO0283 0.35 -0.3
290,631 + SO0283 0.36 -0.4
290,631 + SO0283 0.36 +0.4
290,637 + SO0283 0.37 +1.0
290,638 - SO0283 0.37 -0.4
290,638 - SO0283 0.37 +0.2
290,639 - SO0283 0.37 -1.1
290,642 + SO0283 0.37 +0.1
290,650 + SO0283 0.39 -0.3
290,731 + SO0283 0.52 +0.0
290,733 - SO0283 0.52 -0.2
290,760 - SO0283 0.56 -1.5
290,766 + SO0283 0.57 -0.4
290,766 - SO0283 0.57 +0.2
290,825 - SO0283 0.67 +0.8

Or see this region's nucleotide sequence