Strain Fitness in Shewanella oneidensis MR-1 around SO0110

Experiment: ShewMM_MES_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0108 and SO0109 overlap by 1 nucleotidesSO0109 and SO0110 are separated by 92 nucleotidesSO0110 and SO0111 are separated by 115 nucleotides SO0108: SO0108 - hypothetical transporter component (NCBI ptt file), at 118,747 to 119,961 SO0108 SO0109: SO0109 - conserved hypothetical protein (NCBI ptt file), at 119,961 to 120,194 SO0109 SO0110: SO0110 - hypothetical protease (NCBI ptt file), at 120,287 to 121,630 SO0110 SO0111: SO0111 - hypothetical protein (NCBI ptt file), at 121,746 to 122,360 SO0111 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 119.394 kb on - strand, within SO0108at 119.399 kb on + strand, within SO0108at 119.416 kb on + strand, within SO0108at 119.417 kb on - strand, within SO0108at 119.424 kb on - strand, within SO0108at 119.429 kb on - strand, within SO0108at 119.443 kb on - strand, within SO0108at 119.458 kb on + strand, within SO0108at 119.499 kb on - strand, within SO0108at 119.501 kb on - strand, within SO0108at 119.512 kb on + strand, within SO0108at 119.606 kb on - strand, within SO0108at 119.622 kb on + strand, within SO0108at 119.648 kb on + strand, within SO0108at 119.653 kb on + strand, within SO0108at 119.693 kb on - strand, within SO0108at 119.720 kb on + strand, within SO0108at 119.725 kb on + strand, within SO0108at 119.733 kb on - strand, within SO0108at 119.744 kb on + strand, within SO0108at 119.752 kb on - strand, within SO0108at 119.779 kb on + strand, within SO0108at 119.787 kb on - strand, within SO0108at 119.787 kb on - strand, within SO0108at 119.787 kb on - strand, within SO0108at 119.806 kb on - strand, within SO0108at 119.807 kb on + strand, within SO0108at 119.807 kb on + strand, within SO0108at 119.807 kb on + strand, within SO0108at 119.807 kb on + strand, within SO0108at 119.807 kb on + strand, within SO0108at 119.815 kb on - strand, within SO0108at 119.815 kb on - strand, within SO0108at 119.815 kb on - strand, within SO0108at 119.815 kb on - strand, within SO0108at 119.815 kb on - strand, within SO0108at 120.005 kb on + strand, within SO0109at 120.013 kb on - strand, within SO0109at 120.013 kb on - strand, within SO0109at 120.039 kb on - strand, within SO0109at 120.088 kb on + strand, within SO0109at 120.096 kb on - strand, within SO0109at 120.096 kb on - strand, within SO0109at 120.133 kb on + strand, within SO0109at 120.141 kb on + strand, within SO0109at 120.141 kb on + strand, within SO0109at 120.141 kb on + strand, within SO0109at 120.141 kb on + strand, within SO0109at 120.188 kb on + strandat 120.196 kb on - strandat 120.196 kb on - strandat 120.351 kb on + strandat 120.351 kb on + strandat 120.351 kb on + strandat 120.351 kb on + strandat 120.351 kb on + strandat 120.359 kb on - strandat 120.359 kb on - strandat 120.359 kb on - strandat 120.388 kb on + strandat 120.388 kb on + strandat 120.447 kb on + strand, within SO0110at 120.447 kb on + strand, within SO0110at 120.455 kb on - strand, within SO0110at 120.463 kb on - strand, within SO0110at 120.512 kb on + strand, within SO0110at 120.632 kb on + strand, within SO0110at 120.745 kb on - strand, within SO0110at 120.768 kb on - strand, within SO0110at 120.790 kb on - strand, within SO0110at 120.833 kb on - strand, within SO0110at 120.848 kb on - strand, within SO0110at 120.851 kb on + strand, within SO0110at 120.864 kb on - strand, within SO0110at 120.881 kb on - strand, within SO0110at 120.897 kb on + strand, within SO0110at 120.900 kb on - strand, within SO0110at 120.900 kb on - strand, within SO0110at 120.972 kb on + strand, within SO0110at 120.991 kb on + strand, within SO0110at 120.999 kb on - strand, within SO0110at 121.000 kb on - strand, within SO0110at 121.059 kb on - strand, within SO0110at 121.081 kb on - strand, within SO0110at 121.081 kb on - strand, within SO0110at 121.091 kb on + strand, within SO0110at 121.091 kb on + strand, within SO0110at 121.091 kb on + strand, within SO0110at 121.099 kb on - strand, within SO0110at 121.099 kb on - strand, within SO0110at 121.099 kb on - strand, within SO0110at 121.099 kb on - strand, within SO0110at 121.099 kb on - strand, within SO0110at 121.177 kb on + strand, within SO0110at 121.177 kb on + strand, within SO0110at 121.188 kb on + strand, within SO0110at 121.246 kb on + strand, within SO0110at 121.249 kb on - strand, within SO0110at 121.254 kb on - strand, within SO0110at 121.312 kb on + strand, within SO0110at 121.385 kb on + strand, within SO0110at 121.387 kb on + strand, within SO0110at 121.395 kb on - strand, within SO0110at 121.412 kb on + strand, within SO0110at 121.414 kb on + strand, within SO0110at 121.421 kb on - strand, within SO0110at 121.427 kb on + strand, within SO0110at 121.427 kb on + strand, within SO0110at 121.435 kb on - strand, within SO0110at 121.449 kb on - strand, within SO0110at 121.481 kb on - strand, within SO0110at 121.505 kb on + strandat 121.505 kb on + strandat 121.513 kb on - strandat 121.515 kb on + strandat 121.515 kb on + strandat 121.515 kb on + strandat 121.515 kb on + strandat 121.515 kb on + strandat 121.515 kb on + strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.523 kb on - strandat 121.528 kb on - strandat 121.578 kb on + strandat 121.586 kb on - strandat 121.596 kb on + strandat 121.604 kb on - strandat 121.611 kb on + strandat 121.700 kb on + strandat 121.865 kb on - strand, within SO0111at 121.917 kb on - strand, within SO0111at 122.007 kb on - strand, within SO0111at 122.020 kb on + strand, within SO0111at 122.028 kb on - strand, within SO0111at 122.071 kb on + strand, within SO0111at 122.154 kb on + strand, within SO0111at 122.171 kb on + strand, within SO0111at 122.171 kb on + strand, within SO0111at 122.171 kb on + strand, within SO0111at 122.171 kb on + strand, within SO0111at 122.179 kb on - strand, within SO0111at 122.179 kb on - strand, within SO0111at 122.232 kb on + strand, within SO0111at 122.419 kb on - strandat 122.468 kb on + strandat 122.468 kb on + strandat 122.476 kb on - strandat 122.476 kb on - strandat 122.491 kb on + strandat 122.533 kb on - strandat 122.535 kb on + strandat 122.535 kb on + strandat 122.535 kb on + strandat 122.543 kb on - strandat 122.543 kb on - strandat 122.543 kb on - strandat 122.543 kb on - strandat 122.543 kb on - strandat 122.543 kb on - strandat 122.582 kb on + strandat 122.615 kb on - strandat 122.621 kb on - strandat 122.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ShewMM_MES_buffer
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119,394 - SO0108 0.53 +0.9
119,399 + SO0108 0.54 +0.6
119,416 + SO0108 0.55 +0.9
119,417 - SO0108 0.55 +0.1
119,424 - SO0108 0.56 +0.6
119,429 - SO0108 0.56 +0.5
119,443 - SO0108 0.57 -0.2
119,458 + SO0108 0.59 +0.8
119,499 - SO0108 0.62 -0.3
119,501 - SO0108 0.62 -0.2
119,512 + SO0108 0.63 +0.2
119,606 - SO0108 0.71 +0.2
119,622 + SO0108 0.72 -0.5
119,648 + SO0108 0.74 +0.2
119,653 + SO0108 0.75 +0.2
119,693 - SO0108 0.78 -0.3
119,720 + SO0108 0.80 -0.9
119,725 + SO0108 0.80 +0.2
119,733 - SO0108 0.81 -0.3
119,744 + SO0108 0.82 +0.5
119,752 - SO0108 0.83 +0.4
119,779 + SO0108 0.85 -1.0
119,787 - SO0108 0.86 +0.8
119,787 - SO0108 0.86 -0.4
119,787 - SO0108 0.86 +0.1
119,806 - SO0108 0.87 +0.7
119,807 + SO0108 0.87 -0.3
119,807 + SO0108 0.87 +0.4
119,807 + SO0108 0.87 +0.0
119,807 + SO0108 0.87 -0.7
119,807 + SO0108 0.87 +0.3
119,815 - SO0108 0.88 -0.1
119,815 - SO0108 0.88 -0.3
119,815 - SO0108 0.88 +0.8
119,815 - SO0108 0.88 -0.4
119,815 - SO0108 0.88 +0.2
120,005 + SO0109 0.19 +0.3
120,013 - SO0109 0.22 -0.7
120,013 - SO0109 0.22 -0.6
120,039 - SO0109 0.33 -0.6
120,088 + SO0109 0.54 -0.2
120,096 - SO0109 0.58 +0.1
120,096 - SO0109 0.58 +0.9
120,133 + SO0109 0.74 -0.2
120,141 + SO0109 0.77 -0.5
120,141 + SO0109 0.77 -0.0
120,141 + SO0109 0.77 +0.6
120,141 + SO0109 0.77 +0.6
120,188 + -1.4
120,196 - +0.3
120,196 - -0.3
120,351 + +1.2
120,351 + +0.3
120,351 + -0.1
120,351 + +0.3
120,351 + -3.2
120,359 - +0.7
120,359 - +0.1
120,359 - +0.4
120,388 + +0.1
120,388 + -1.6
120,447 + SO0110 0.12 -0.5
120,447 + SO0110 0.12 -0.9
120,455 - SO0110 0.12 +0.6
120,463 - SO0110 0.13 -0.3
120,512 + SO0110 0.17 +0.2
120,632 + SO0110 0.26 -0.1
120,745 - SO0110 0.34 +0.9
120,768 - SO0110 0.36 -0.2
120,790 - SO0110 0.37 +1.3
120,833 - SO0110 0.41 +0.4
120,848 - SO0110 0.42 -0.3
120,851 + SO0110 0.42 -0.9
120,864 - SO0110 0.43 +0.1
120,881 - SO0110 0.44 -0.2
120,897 + SO0110 0.45 -0.2
120,900 - SO0110 0.46 -0.3
120,900 - SO0110 0.46 -0.2
120,972 + SO0110 0.51 -0.4
120,991 + SO0110 0.52 +1.0
120,999 - SO0110 0.53 +0.0
121,000 - SO0110 0.53 +0.1
121,059 - SO0110 0.57 +1.0
121,081 - SO0110 0.59 +0.1
121,081 - SO0110 0.59 +1.2
121,091 + SO0110 0.60 +1.3
121,091 + SO0110 0.60 +1.3
121,091 + SO0110 0.60 +0.4
121,099 - SO0110 0.60 -0.2
121,099 - SO0110 0.60 +0.8
121,099 - SO0110 0.60 -0.0
121,099 - SO0110 0.60 -0.1
121,099 - SO0110 0.60 +1.1
121,177 + SO0110 0.66 +0.8
121,177 + SO0110 0.66 +0.5
121,188 + SO0110 0.67 +0.7
121,246 + SO0110 0.71 +0.4
121,249 - SO0110 0.72 +0.4
121,254 - SO0110 0.72 +1.5
121,312 + SO0110 0.76 +0.1
121,385 + SO0110 0.82 +0.5
121,387 + SO0110 0.82 -0.1
121,395 - SO0110 0.82 -1.1
121,412 + SO0110 0.84 +0.3
121,414 + SO0110 0.84 -0.1
121,421 - SO0110 0.84 +0.0
121,427 + SO0110 0.85 +0.8
121,427 + SO0110 0.85 -0.4
121,435 - SO0110 0.85 +0.7
121,449 - SO0110 0.86 +0.2
121,481 - SO0110 0.89 +0.6
121,505 + -0.6
121,505 + -0.2
121,513 - -0.6
121,515 + +0.6
121,515 + +0.2
121,515 + -0.2
121,515 + -0.4
121,515 + -0.1
121,515 + -0.2
121,523 - +0.5
121,523 - +0.0
121,523 - +0.8
121,523 - +1.3
121,523 - -0.7
121,523 - +0.1
121,528 - +0.2
121,578 + +0.6
121,586 - +0.1
121,596 + +1.4
121,604 - +1.0
121,611 + +1.8
121,700 + +0.1
121,865 - SO0111 0.19 -0.2
121,917 - SO0111 0.28 +0.5
122,007 - SO0111 0.42 -0.4
122,020 + SO0111 0.45 +0.4
122,028 - SO0111 0.46 +0.0
122,071 + SO0111 0.53 +1.4
122,154 + SO0111 0.66 -0.2
122,171 + SO0111 0.69 -0.7
122,171 + SO0111 0.69 -1.0
122,171 + SO0111 0.69 +1.2
122,171 + SO0111 0.69 +0.6
122,179 - SO0111 0.70 +0.5
122,179 - SO0111 0.70 +0.0
122,232 + SO0111 0.79 +0.4
122,419 - +0.7
122,468 + -0.6
122,468 + -0.0
122,476 - +0.4
122,476 - -0.0
122,491 + -0.3
122,533 - -1.4
122,535 + -0.6
122,535 + +0.2
122,535 + -0.3
122,543 - -0.6
122,543 - +0.6
122,543 - -0.6
122,543 - -0.0
122,543 - +0.4
122,543 - +0.3
122,582 + -0.1
122,615 - +0.8
122,621 - +0.4
122,621 - -0.1

Or see this region's nucleotide sequence