Strain Fitness in Shewanella oneidensis MR-1 around SO4354

Experiment: M5 outer

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M5 outer
4,545,682	+				-1.3
4,545,682	+				-0.7
4,545,695	-				+0.2
4,545,704	-				+0.2
4,545,750	+				-3.0
4,545,750	+				-0.1
4,545,750	+				-2.1
4,545,750	+				-2.4
4,545,750	+				-1.6
4,545,758	-				-0.7
4,545,758	-				-0.2
4,545,765	-				-0.4
4,545,879	+		SO4351.1	0.17	-1.2
4,545,886	+		SO4351.1	0.20	+0.2
4,545,887	-		SO4351.1	0.20	+1.0
4,545,887	-		SO4351.1	0.20	-1.1
4,545,899	+		SO4351.1	0.25	+0.4
4,546,026	+		SO4351.1	0.73	-3.1
4,546,037	+		SO4351.1	0.77	+1.5
4,546,037	+		SO4351.1	0.77	+2.1
4,546,037	+		SO4351.1	0.77	-1.7
4,546,037	+		SO4351.1	0.77	-0.4
4,546,037	+		SO4351.1	0.77	-4.0
4,546,037	+		SO4351.1	0.77	-2.0
4,546,037	+		SO4351.1	0.77	-0.9
4,546,045	-		SO4351.1	0.80	-3.4
4,546,045	-		SO4351.1	0.80	-0.0
4,546,045	-		SO4351.1	0.80	+0.5
4,546,074	-				+0.2
4,546,074	-				+2.1
4,546,082	+				-0.9
4,546,138	+				-0.7
4,546,148	+				-1.6
4,546,148	+				-2.1
4,546,162	+				+0.4
4,546,162	+				+1.0
4,546,162	+				-1.8
4,546,162	+				+1.4
4,546,162	-				-0.4
4,546,167	+				-1.0
4,546,170	-				+2.0
4,546,170	-				-0.5
4,546,170	-				+1.4
4,546,180	-				-0.8
4,546,188	-		SO4353	0.11	-1.2
4,546,286	+		SO4353	0.29	+0.1
4,546,286	+		SO4353	0.29	-1.2
4,546,286	+		SO4353	0.29	+1.2
4,546,294	+		SO4353	0.30	-0.0
4,546,296	-		SO4353	0.31	-2.4
4,546,320	+		SO4353	0.35	+0.5
4,546,328	-		SO4353	0.37	+0.2
4,546,360	-		SO4353	0.43	+1.5
4,546,429	+		SO4353	0.55	-1.2
4,546,429	+		SO4353	0.55	-1.6
4,546,430	+		SO4353	0.55	-0.3
4,546,430	+		SO4353	0.55	-1.0
4,546,430	+		SO4353	0.55	-0.4
4,546,430	+		SO4353	0.55	-2.7
4,546,430	+		SO4353	0.55	-0.6
4,546,435	+		SO4353	0.56	-1.8
4,546,436	+		SO4353	0.57	-0.6
4,546,436	+		SO4353	0.57	+1.3
4,546,436	+		SO4353	0.57	+0.2
4,546,437	-		SO4353	0.57	-0.7
4,546,437	-		SO4353	0.57	-1.9
4,546,437	-		SO4353	0.57	+0.2
4,546,444	-		SO4353	0.58	-0.5
4,546,448	+		SO4353	0.59	-1.7
4,546,448	+		SO4353	0.59	-1.8
4,546,448	+		SO4353	0.59	-0.1
4,546,448	+		SO4353	0.59	-0.7
4,546,448	+		SO4353	0.59	+0.1
4,546,448	+		SO4353	0.59	-1.1
4,546,456	-		SO4353	0.60	+0.5
4,546,456	-		SO4353	0.60	+0.8
4,546,456	-		SO4353	0.60	-0.8
4,546,456	-		SO4353	0.60	-0.9
4,546,458	+		SO4353	0.61	-1.2
4,546,458	+		SO4353	0.61	-2.8
4,546,458	+		SO4353	0.61	-0.1
4,546,458	+		SO4353	0.61	+1.8
4,546,458	+		SO4353	0.61	+1.7
4,546,458	+		SO4353	0.61	+1.6
4,546,458	+		SO4353	0.61	+1.1
4,546,458	+		SO4353	0.61	+2.0
4,546,458	+		SO4353	0.61	-0.8
4,546,458	+		SO4353	0.61	+0.5
4,546,458	+		SO4353	0.61	-0.6
4,546,458	+		SO4353	0.61	-0.5
4,546,458	+		SO4353	0.61	-0.6
4,546,458	+		SO4353	0.61	-2.4
4,546,458	+		SO4353	0.61	-0.6
4,546,458	+		SO4353	0.61	-1.2
4,546,459	+		SO4353	0.61	-0.9
4,546,466	-		SO4353	0.62	-1.4
4,546,466	-		SO4353	0.62	-1.5
4,546,466	-		SO4353	0.62	+0.1
4,546,466	-		SO4353	0.62	+0.3
4,546,466	-		SO4353	0.62	+0.9
4,546,466	-		SO4353	0.62	+3.1
4,546,466	-		SO4353	0.62	-1.5
4,546,466	-		SO4353	0.62	-0.2
4,546,466	-		SO4353	0.62	+0.9
4,546,466	-		SO4353	0.62	+3.1
4,546,466	-		SO4353	0.62	+2.0
4,546,466	-		SO4353	0.62	+1.1
4,546,466	-		SO4353	0.62	+0.9
4,546,466	-		SO4353	0.62	-2.0
4,546,466	-		SO4353	0.62	-0.2
4,546,466	-		SO4353	0.62	+0.9
4,546,466	-		SO4353	0.62	+2.2
4,546,479	+		SO4353	0.64	-0.6
4,546,479	+		SO4353	0.64	-0.8
4,546,482	-		SO4353	0.65	-1.4
4,546,487	-		SO4353	0.66	-0.2
4,546,487	-		SO4353	0.66	+2.1
4,546,487	-		SO4353	0.66	-0.3
4,546,487	-		SO4353	0.66	-0.4
4,546,487	-		SO4353	0.66	+0.9
4,546,490	+		SO4353	0.66	+1.2
4,546,528	-		SO4353	0.73	-0.4
4,546,551	-		SO4353	0.78	+2.4
4,546,607	+		SO4353	0.88	-0.8
4,546,615	-		SO4353	0.90	+1.5
4,546,615	-		SO4353	0.90	+1.1
4,546,648	+				-0.1
4,546,655	-				+0.1
4,546,698	+		SO4354	0.20	+0.4
4,546,698	+		SO4354	0.20	+0.6
4,546,698	+		SO4354	0.20	+1.3
4,546,698	+		SO4354	0.20	+2.5
4,546,698	+		SO4354	0.20	+0.8
4,546,698	+		SO4354	0.20	-1.8
4,546,698	+		SO4354	0.20	+0.1
4,546,698	+		SO4354	0.20	+0.8
4,546,698	+		SO4354	0.20	-0.4
4,546,699	+		SO4354	0.20	-0.3
4,546,706	-		SO4354	0.22	-1.6
4,546,706	-		SO4354	0.22	+1.0
4,546,706	-		SO4354	0.22	-0.4
4,546,706	-		SO4354	0.22	+0.3
4,546,706	-		SO4354	0.22	+0.7
4,546,706	-		SO4354	0.22	-1.3
4,546,706	-		SO4354	0.22	-0.4
4,546,706	-		SO4354	0.22	+1.5
4,546,706	-		SO4354	0.22	-0.3
4,546,706	-		SO4354	0.22	+0.6
4,546,706	-		SO4354	0.22	-1.7
4,546,706	-		SO4354	0.22	-1.5
4,546,706	-		SO4354	0.22	-1.2
4,546,712	+		SO4354	0.24	-0.3
4,546,712	+		SO4354	0.24	-0.0
4,546,714	+				+2.1
4,546,715	-		SO4354	0.25	-1.6
4,546,725	-		SO4354	0.28	+1.9
4,546,753	+		SO4354	0.36	+0.8
4,546,801	+		SO4354	0.51	-1.3
4,546,834	+		SO4354	0.61	-1.7
4,546,848	+		SO4354	0.65	-0.6
4,546,848	+		SO4354	0.65	-1.6
4,546,848	+		SO4354	0.65	+0.6
4,546,848	+		SO4354	0.65	+2.1
4,546,848	+		SO4354	0.65	-2.6
4,546,848	+		SO4354	0.65	-0.6
4,546,848	+		SO4354	0.65	-2.1
4,546,848	+		SO4354	0.65	-0.0
4,546,848	+		SO4354	0.65	-2.5
4,546,848	+		SO4354	0.65	-1.2
4,546,848	+		SO4354	0.65	-0.8
4,546,848	+		SO4354	0.65	-1.7
4,546,856	-		SO4354	0.68	-1.3
4,546,856	-		SO4354	0.68	+0.4
4,546,856	-		SO4354	0.68	-0.2
4,546,856	-		SO4354	0.68	-1.1
4,546,856	-		SO4354	0.68	-2.3
4,546,856	-		SO4354	0.68	+0.8
4,546,856	-		SO4354	0.68	-0.7
4,546,856	-		SO4354	0.68	-4.1
4,546,856	-		SO4354	0.68	+0.6
4,546,856	-		SO4354	0.68	-0.9
4,546,856	-		SO4354	0.68	-1.9
4,546,856	-		SO4354	0.68	+0.9
4,546,856	-		SO4354	0.68	-2.5
4,546,856	-		SO4354	0.68	-0.2
4,546,856	-		SO4354	0.68	+1.5
4,546,856	-		SO4354	0.68	+0.1
4,546,856	-		SO4354	0.68	-2.4
4,546,856	-		SO4354	0.68	-1.3
4,546,856	-		SO4354	0.68	+1.2
4,546,856	-		SO4354	0.68	-0.8
4,546,856	-		SO4354	0.68	+1.0
4,546,860	+		SO4354	0.69	-0.6
4,546,861	-		SO4354	0.69	-0.1
4,546,866	+		SO4354	0.71	+1.0
4,546,866	+		SO4354	0.71	-0.4
4,546,874	-		SO4354	0.73	+0.5
4,546,880	+		SO4354	0.75	-1.6
4,546,880	+		SO4354	0.75	+0.3
4,546,880	+		SO4354	0.75	-1.5
4,546,880	+		SO4354	0.75	+1.6
4,546,880	+		SO4354	0.75	-1.2
4,546,880	+		SO4354	0.75	-0.4
4,546,880	+		SO4354	0.75	-1.1
4,546,886	+		SO4354	0.77	+0.5
4,546,888	-		SO4354	0.78	-0.3
4,546,888	-		SO4354	0.78	+0.5
4,546,895	+		SO4354	0.80	-0.5
4,546,895	+		SO4354	0.80	-1.1
4,546,905	+		SO4354	0.83	-0.4
4,546,913	-		SO4354	0.85	+1.0
4,546,915	+		SO4354	0.86	+0.8
4,546,915	+		SO4354	0.86	+0.4
4,546,922	-		SO4354	0.88	-0.9
4,546,923	-		SO4354	0.88	-1.1
4,546,923	-		SO4354	0.88	-3.0
4,546,923	-		SO4354	0.88	+0.2
4,546,923	-		SO4354	0.88	-2.8
4,546,923	-		SO4354	0.88	-0.3
4,546,923	-		SO4354	0.88	-0.4
4,546,924	+		SO4354	0.89	+0.2
4,546,927	+		SO4354	0.90	-1.8
4,546,927	+		SO4354	0.90	-0.6
4,546,927	+		SO4354	0.90	-0.6
4,546,927	+		SO4354	0.90	+1.6
4,546,927	+		SO4354	0.90	-0.0
4,546,927	+		SO4354	0.90	-0.8
4,546,927	+		SO4354	0.90	+0.9
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	-1.5
4,546,927	+		SO4354	0.90	+0.2
4,546,927	+		SO4354	0.90	-0.2
4,546,927	+		SO4354	0.90	-0.3
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	-1.1
4,546,927	+		SO4354	0.90	+0.2
4,546,927	+		SO4354	0.90	-0.9
4,546,927	+		SO4354	0.90	-0.8
4,546,927	+		SO4354	0.90	+1.1
4,546,927	+		SO4354	0.90	-0.4
4,546,927	+		SO4354	0.90	-0.5
4,546,927	+		SO4354	0.90	+0.3
4,546,927	+		SO4354	0.90	-1.3
4,546,927	+		SO4354	0.90	+1.7
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	+0.1
4,546,927	+		SO4354	0.90	-2.2
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	-1.8
4,546,927	+		SO4354	0.90	-0.2
4,546,927	+		SO4354	0.90	+1.1
4,546,927	+		SO4354	0.90	-1.1
4,546,927	+		SO4354	0.90	-1.8
4,546,927	+		SO4354	0.90	-0.6
4,546,927	+		SO4354	0.90	-0.0
4,546,927	+		SO4354	0.90	+0.9
4,546,927	+		SO4354	0.90	+0.0
4,546,927	+		SO4354	0.90	+0.8
4,546,927	+		SO4354	0.90	-0.0
4,546,927	+		SO4354	0.90	-1.6
4,546,927	+		SO4354	0.90	+0.9
4,546,927	+		SO4354	0.90	-1.0
4,546,927	+		SO4354	0.90	-1.4
4,546,927	+		SO4354	0.90	-0.7
4,546,927	+		SO4354	0.90	-1.6
4,546,927	+		SO4354	0.90	-0.5
4,546,927	+		SO4354	0.90	-0.2
4,546,927	+		SO4354	0.90	-0.6
4,546,927	+		SO4354	0.90	-0.8
4,546,927	+		SO4354	0.90	-1.8
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	+0.7
4,546,927	+		SO4354	0.90	-1.0
4,546,927	+		SO4354	0.90	+1.1
4,546,927	+		SO4354	0.90	-1.2
4,546,927	+		SO4354	0.90	-2.2
4,546,927	+		SO4354	0.90	-1.5
4,546,927	+		SO4354	0.90	+0.9
4,546,927	+		SO4354	0.90	+0.1
4,546,927	+		SO4354	0.90	+0.2
4,546,927	+		SO4354	0.90	-0.2
4,546,927	+		SO4354	0.90	+0.2
4,546,927	+		SO4354	0.90	-0.2
4,546,927	+		SO4354	0.90	+0.4
4,546,927	+		SO4354	0.90	-0.5
4,546,927	+		SO4354	0.90	+0.6
4,546,927	+		SO4354	0.90	-2.9
4,546,927	+		SO4354	0.90	-2.5
4,546,927	+		SO4354	0.90	-1.7
4,546,927	+		SO4354	0.90	+0.3
4,546,927	+		SO4354	0.90	+0.5
4,546,927	+		SO4354	0.90	+0.4
4,546,927	+		SO4354	0.90	-0.3
4,546,927	+		SO4354	0.90	+1.4
4,546,927	+		SO4354	0.90	-1.9
4,546,927	+		SO4354	0.90	+1.0
4,546,927	+		SO4354	0.90	-0.2
4,546,927	+		SO4354	0.90	-0.0
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	-1.2
4,546,927	+		SO4354	0.90	+0.1
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	+3.1
4,546,927	+		SO4354	0.90	-1.0
4,546,927	+		SO4354	0.90	+1.7
4,546,927	+		SO4354	0.90	+0.4
4,546,927	+		SO4354	0.90	-1.6
4,546,927	+		SO4354	0.90	-2.2
4,546,927	+		SO4354	0.90	+0.1
4,546,927	+		SO4354	0.90	-0.6
4,546,927	+		SO4354	0.90	-0.3
4,546,927	+		SO4354	0.90	-0.6
4,546,927	+		SO4354	0.90	-0.6
4,546,927	+		SO4354	0.90	-1.1
4,546,927	+		SO4354	0.90	-1.6
4,546,927	+		SO4354	0.90	+1.7
4,546,927	+		SO4354	0.90	-1.4
4,546,927	+		SO4354	0.90	-2.0
4,546,927	+		SO4354	0.90	-1.3
4,546,927	+		SO4354	0.90	+0.5
4,546,927	+		SO4354	0.90	+0.6
4,546,927	+		SO4354	0.90	-0.5
4,546,927	+		SO4354	0.90	+1.0
4,546,927	+		SO4354	0.90	-0.4
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	-1.2
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	-0.1
4,546,927	+		SO4354	0.90	-0.9
4,546,927	+		SO4354	0.90	+0.0
4,546,927	+		SO4354	0.90	+1.2
4,546,927	+		SO4354	0.90	+0.4
4,546,927	+		SO4354	0.90	-1.9
4,546,927	+		SO4354	0.90	+1.7
4,546,927	+		SO4354	0.90	+0.5
4,546,927	+		SO4354	0.90	+0.6
4,546,927	+		SO4354	0.90	+0.5
4,546,927	+		SO4354	0.90	+1.5
4,546,929	+				-1.5
4,546,929	+				+0.0
4,546,935	-				-0.2
4,546,935	-				+0.2
4,546,935	-				-0.6
4,546,935	-				-1.6
4,546,935	-				+0.7
4,546,935	-				+1.2
4,546,935	-				+0.4
4,546,935	-				+1.5
4,546,935	-				-0.7
4,546,935	-				-0.1
4,546,935	-				+0.4
4,546,935	-				-0.2
4,546,935	-				-0.7
4,546,935	-				+1.2
4,546,935	-				-0.3
4,546,935	-				+2.2
4,546,935	-				-2.1
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4,546,935	-				+7.0
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