Strain Fitness in Shewanella oneidensis MR-1 around SO3305

Experiment: M5 outer

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M5 outer
3,453,592	-		SO3303	0.68	-1.3
3,453,665	-		SO3303	0.71	+0.7
3,453,688	+		SO3303	0.72	+0.6
3,453,735	+		SO3303	0.74	-0.3
3,453,741	+		SO3303	0.74	-2.1
3,453,741	+		SO3303	0.74	+2.1
3,453,748	-		SO3303	0.74	+0.8
3,453,749	-		SO3303	0.74	-0.1
3,453,749	-		SO3303	0.74	-0.7
3,453,756	-		SO3303	0.75	+0.0
3,453,774	-		SO3303	0.75	+0.8
3,453,810	-		SO3303	0.77	+1.2
3,453,811	-		SO3303	0.77	+1.3
3,453,821	-		SO3303	0.77	-2.2
3,453,826	+		SO3303	0.78	-0.1
3,453,826	+		SO3303	0.78	-0.6
3,453,828	-		SO3303	0.78	+1.0
3,453,834	+		SO3303	0.78	-0.3
3,453,834	+		SO3303	0.78	+0.8
3,453,834	+		SO3303	0.78	+0.3
3,453,838	+		SO3303	0.78	+1.6
3,453,838	+		SO3303	0.78	+0.6
3,453,842	-		SO3303	0.78	-1.0
3,453,842	-		SO3303	0.78	+0.5
3,453,842	-		SO3303	0.78	+0.6
3,453,844	+		SO3303	0.78	+1.2
3,453,844	+		SO3303	0.78	-0.2
3,453,844	+		SO3303	0.78	+0.4
3,453,849	+		SO3303	0.79	+0.4
3,453,852	-		SO3303	0.79	+0.9
3,453,852	-		SO3303	0.79	+0.3
3,453,852	-		SO3303	0.79	-1.7
3,453,853	-		SO3303	0.79	+0.3
3,453,857	-		SO3303	0.79	-0.3
3,453,914	+		SO3303	0.81	+1.4
3,453,928	-		SO3303	0.82	+0.5
3,454,003	+		SO3303	0.85	+2.2
3,454,011	-		SO3303	0.85	+1.2
3,454,022	-		SO3303	0.86	-2.1
3,454,043	-		SO3303	0.86	+0.6
3,454,049	+		SO3303	0.87	-0.7
3,454,049	+		SO3303	0.87	+0.2
3,454,072	-		SO3303	0.88	+0.7
3,454,081	+		SO3303	0.88	-0.5
3,454,087	+		SO3303	0.88	+1.1
3,454,094	-		SO3303	0.89	+0.6
3,454,095	-		SO3303	0.89	-1.9
3,454,104	+		SO3303	0.89	+0.6
3,454,109	+		SO3303	0.89	-1.1
3,454,217	-				+1.0
3,454,252	+				+0.5
3,454,262	+				-1.0
3,454,275	-				-2.0
3,454,278	+				+0.9
3,454,285	+				-1.0
3,454,285	-				-0.8
3,454,285	-				-0.5
3,454,291	+				-1.6
3,454,291	+				+0.2
3,454,291	-				+1.4
3,454,291	-				+0.2
3,454,299	-				-1.3
3,454,299	-				-1.0
3,454,312	+				+0.5
3,454,313	-				+0.5
3,454,317	+				+0.6
3,454,324	+				-0.1
3,454,332	-				-0.4
3,454,334	+				+0.1
3,454,346	+				-1.7
3,454,385	+				-0.1
3,454,385	+				+1.8
3,454,385	+				-0.6
3,454,385	+				-0.7
3,454,393	-				+0.1
3,454,407	+				+0.3
3,454,415	-				+1.2
3,454,425	+				+0.8
3,454,436	+				-0.5
3,454,440	-				+0.6
3,454,441	+				+0.0
3,454,441	+				+1.9
3,454,441	+				+2.8
3,454,449	-				+3.4
3,454,449	-				+0.6
3,454,449	-				-0.9
3,454,451	+				+0.4
3,454,465	+				+1.1
3,454,483	-				+1.1
3,454,490	+				+0.4
3,454,494	+				-0.1
3,454,494	+				-0.4
3,454,494	+				+0.4
3,454,494	+				+1.0
3,454,494	+				+0.5
3,454,502	-				+0.0
3,454,502	-				-0.1
3,454,502	-				-0.8
3,454,502	-				-0.3
3,454,502	-				+1.9
3,454,583	+				+1.9
3,454,583	+				-1.0
3,454,586	+				-0.3
3,454,586	+				+2.1
3,454,586	+				+0.5
3,454,589	-				-0.3
3,454,640	+		SO3305	0.11	+2.1
3,454,640	+		SO3305	0.11	+0.6
3,454,640	+		SO3305	0.11	-1.2
3,454,640	+		SO3305	0.11	+2.3
3,454,648	-		SO3305	0.12	+0.6
3,454,648	-		SO3305	0.12	+0.2
3,454,648	-		SO3305	0.12	+2.2
3,454,648	-		SO3305	0.12	-0.6
3,454,648	-		SO3305	0.12	-0.3
3,454,669	+		SO3305	0.16	+0.1
3,454,669	+		SO3305	0.16	+1.0
3,454,677	-		SO3305	0.17	-1.2
3,454,677	-		SO3305	0.17	-1.8
3,454,683	+		SO3305	0.18	+1.0
3,454,683	+		SO3305	0.18	+2.7
3,454,683	+		SO3305	0.18	-0.8
3,454,684	+		SO3305	0.18	+2.5
3,454,691	-		SO3305	0.19	-0.1
3,454,691	-		SO3305	0.19	+1.4
3,454,691	-		SO3305	0.19	-1.6
3,454,718	+		SO3305	0.24	+1.0
3,454,725	+		SO3305	0.25	-0.2
3,454,725	+		SO3305	0.25	+0.7
3,454,726	-		SO3305	0.25	-1.2
3,454,726	-		SO3305	0.25	+0.8
3,454,730	+		SO3305	0.26	-1.3
3,454,735	+		SO3305	0.26	+0.9
3,454,735	+		SO3305	0.26	+0.7
3,454,735	+		SO3305	0.26	+0.1
3,454,735	+		SO3305	0.26	-0.5
3,454,735	+		SO3305	0.26	+2.1
3,454,735	+		SO3305	0.26	-0.5
3,454,738	-		SO3305	0.27	+0.8
3,454,738	-		SO3305	0.27	+0.8
3,454,738	-		SO3305	0.27	-0.8
3,454,743	-		SO3305	0.28	+0.4
3,454,743	-		SO3305	0.28	-1.6
3,454,743	-		SO3305	0.28	+0.5
3,454,743	-		SO3305	0.28	+1.1
3,454,743	-		SO3305	0.28	-1.4
3,454,743	-		SO3305	0.28	+0.7
3,454,765	+		SO3305	0.31	+1.1
3,454,785	-		SO3305	0.34	-0.4
3,454,817	+		SO3305	0.40	+1.7
3,454,826	+		SO3305	0.41	-0.7
3,454,826	+		SO3305	0.41	-0.4
3,454,826	+		SO3305	0.41	-0.1
3,454,826	+		SO3305	0.41	+2.0
3,454,834	-		SO3305	0.42	-1.3
3,454,834	-		SO3305	0.42	-1.2
3,454,834	-		SO3305	0.42	-0.4
3,454,834	-		SO3305	0.42	-0.5
3,454,879	+		SO3305	0.50	+0.3
3,454,884	+		SO3305	0.50	-1.8
3,454,891	+		SO3305	0.52	-1.3
3,454,892	-		SO3305	0.52	-1.2
3,454,899	-		SO3305	0.53	-0.7
3,454,924	+		SO3305	0.57	+0.7
3,454,929	+		SO3305	0.58	+1.4
3,454,934	+		SO3305	0.58	+0.4
3,454,934	+		SO3305	0.58	+0.2
3,454,934	+		SO3305	0.58	+0.6
3,454,934	+		SO3305	0.58	-1.5
3,454,934	+		SO3305	0.58	+1.8
3,454,934	+		SO3305	0.58	+2.6
3,454,939	+		SO3305	0.59	+0.0
3,454,942	-		SO3305	0.60	+1.8
3,454,942	-		SO3305	0.60	-0.7
3,454,942	-		SO3305	0.60	-1.5
3,454,942	-		SO3305	0.60	+0.3
3,454,942	-		SO3305	0.60	+0.6
3,454,942	-		SO3305	0.60	-0.4
3,454,942	-		SO3305	0.60	+0.8
3,454,942	-		SO3305	0.60	+1.2
3,454,942	-		SO3305	0.60	+2.0
3,454,954	-		SO3305	0.62	-1.4
3,454,954	-		SO3305	0.62	+1.4
3,454,981	+		SO3305	0.66	+0.2
3,454,982	-		SO3305	0.66	+0.5
3,454,984	+		SO3305	0.67	-1.8
3,454,986	+		SO3305	0.67	-0.4
3,454,992	-		SO3305	0.68	+0.3
3,455,004	+		SO3305	0.70	+0.9
3,455,009	+		SO3305	0.71	-0.8
3,455,009	+		SO3305	0.71	+2.4
3,455,009	+		SO3305	0.71	+1.5
3,455,017	-		SO3305	0.72	-2.1
3,455,050	+		SO3305	0.77	+1.6
3,455,050	+		SO3305	0.77	+0.2
3,455,058	-		SO3305	0.78	+0.7
3,455,058	-		SO3305	0.78	-0.5
3,455,058	-		SO3305	0.78	+0.4
3,455,095	+		SO3305	0.84	+0.6
3,455,095	+		SO3305	0.84	+0.0
3,455,095	+		SO3305	0.84	-0.2
3,455,124	+		SO3305	0.89	+1.4
3,455,129	+		SO3305	0.90	-0.1
3,455,144	+				-0.1
3,455,144	+				+1.6
3,455,144	+				+0.3
3,455,159	-				-0.5
3,455,201	+				-1.7
3,455,201	+				+1.2
3,455,209	-				-0.9
3,455,211	+				+1.0
3,455,219	+				-0.2
3,455,219	-				-0.7
3,455,227	-				-1.7
3,455,363	-				+0.8
3,455,369	+				-0.6
3,455,369	+				+0.5
3,455,384	+				-0.7
3,455,387	-				+1.9
3,455,426	+				+2.0
3,455,434	-				+0.1
3,455,434	-				+2.2
3,455,434	-				-0.7
3,455,434	-				+0.6
3,455,436	+				+1.0
3,455,469	+				-0.4
3,455,490	-				+0.5
3,455,490	-				+2.2
3,455,492	+				-1.7
3,455,495	-				+0.9
3,455,512	-				+0.2
3,455,514	+				+1.3
3,455,514	+				+0.9
3,455,514	+				+1.9
3,455,514	+				+1.2
3,455,514	+				+1.3
3,455,514	+				-0.5
3,455,522	-				+0.4
3,455,522	-				+0.8
3,455,522	-				+0.6
3,455,522	-				+0.4
3,455,523	-				-2.3
3,455,532	-				-2.5
3,455,561	+		SO3306	0.10	-2.6
3,455,572	+		SO3306	0.11	+0.3
3,455,584	-		SO3306	0.11	-1.2
3,455,584	-		SO3306	0.11	+0.4
3,455,613	+		SO3306	0.12	+1.4
3,455,616	+		SO3306	0.12	+2.0
3,455,624	-		SO3306	0.12	+1.1
3,455,677	+		SO3306	0.14	+0.5
3,455,691	+		SO3306	0.14	+0.6
3,455,691	+		SO3306	0.14	-0.0
3,455,692	+		SO3306	0.14	-1.7
3,455,692	+		SO3306	0.14	+1.0
3,455,692	+		SO3306	0.14	+0.4
3,455,692	+		SO3306	0.14	-0.1
3,455,692	+		SO3306	0.14	+0.4
3,455,692	+		SO3306	0.14	+0.6
3,455,692	-		SO3306	0.14	+0.1
3,455,692	-		SO3306	0.14	-0.5
3,455,697	+		SO3306	0.14	+4.0
3,455,697	+		SO3306	0.14	+0.0
3,455,697	+		SO3306	0.14	-1.2
3,455,698	+		SO3306	0.14	+0.5
3,455,699	+		SO3306	0.14	+1.3
3,455,699	-		SO3306	0.14	+0.4
3,455,699	-		SO3306	0.14	+1.3
3,455,699	-		SO3306	0.14	+0.2
3,455,700	-		SO3306	0.14	+0.2
3,455,700	-		SO3306	0.14	-1.8
3,455,700	-		SO3306	0.14	+1.4
3,455,700	-		SO3306	0.14	+1.1
3,455,700	-		SO3306	0.14	+0.5
3,455,700	-		SO3306	0.14	+0.6
3,455,700	-		SO3306	0.14	+0.4
3,455,700	-		SO3306	0.14	+1.2
3,455,700	-		SO3306	0.14	-0.6
3,455,700	-		SO3306	0.14	-1.5
3,455,700	-		SO3306	0.14	-1.6
3,455,700	-		SO3306	0.14	+2.4
3,455,700	-		SO3306	0.14	+1.2
3,455,700	-		SO3306	0.14	+1.0
3,455,700	-		SO3306	0.14	+2.0
3,455,700	-		SO3306	0.14	+1.4
3,455,700	-		SO3306	0.14	+2.6
3,455,700	-		SO3306	0.14	-1.7
3,455,705	-		SO3306	0.15	+1.0
3,455,705	-		SO3306	0.15	+1.8
3,455,706	-		SO3306	0.15	+0.1
3,455,712	-		SO3306	0.15	+2.9
3,455,735	+		SO3306	0.15	+0.4
3,455,748	-		SO3306	0.16	-1.2
3,455,750	+		SO3306	0.16	+1.6
3,455,750	+		SO3306	0.16	+0.3
3,455,750	+		SO3306	0.16	-1.0
3,455,755	+		SO3306	0.16	-1.2
3,455,763	+		SO3306	0.16	+2.4
3,455,763	+		SO3306	0.16	-0.6
3,455,765	+		SO3306	0.16	+1.5
3,455,765	+		SO3306	0.16	-1.6
3,455,771	-		SO3306	0.16	+0.1
3,455,795	-		SO3306	0.17	-0.6
3,455,823	+		SO3306	0.18	-0.4
3,455,823	+		SO3306	0.18	+0.8
3,455,823	+		SO3306	0.18	+0.6
3,455,823	+		SO3306	0.18	+1.6
3,455,823	+		SO3306	0.18	+0.8
3,455,823	+		SO3306	0.18	+2.2
3,455,823	+		SO3306	0.18	+0.8
3,455,823	+		SO3306	0.18	+1.1
3,455,823	+		SO3306	0.18	+1.1
3,455,823	+		SO3306	0.18	+0.0
3,455,823	+		SO3306	0.18	+2.0
3,455,823	+		SO3306	0.18	-0.4
3,455,823	+		SO3306	0.18	-0.5
3,455,823	+		SO3306	0.18	+0.6
3,455,823	+		SO3306	0.18	+0.6
3,455,831	-		SO3306	0.18	-0.4
3,455,831	-		SO3306	0.18	+1.4
3,455,831	-		SO3306	0.18	+0.0
3,455,831	-		SO3306	0.18	+1.0
3,455,831	-		SO3306	0.18	+1.2
3,455,831	-		SO3306	0.18	-0.3
3,455,831	-		SO3306	0.18	+2.4
3,455,837	-		SO3306	0.18	+0.2
3,455,878	-		SO3306	0.19	-0.1
3,455,878	-		SO3306	0.19	+3.0
3,455,909	-		SO3306	0.20	-1.8
3,455,920	-		SO3306	0.21	+0.4
3,455,948	+		SO3306	0.21	+0.8
3,455,955	+		SO3306	0.22	+0.3
3,455,955	+		SO3306	0.22	+1.6
3,455,975	+		SO3306	0.22	-1.3
3,455,975	+		SO3306	0.22	+0.0
3,455,975	+		SO3306	0.22	-0.0
3,455,983	-		SO3306	0.22	-0.4
3,455,983	-		SO3306	0.22	-0.5
3,456,013	-		SO3306	0.23	+3.5
3,456,023	+		SO3306	0.24	+0.1
3,456,036	+		SO3306	0.24	+0.7
3,456,045	+		SO3306	0.24	-1.0
3,456,050	+		SO3306	0.24	-1.4
3,456,057	-		SO3306	0.25	-1.3
3,456,061	+		SO3306	0.25	-1.1
3,456,066	+		SO3306	0.25	+0.3
3,456,095	+		SO3306	0.26	+0.4
3,456,117	+		SO3306	0.26	+0.6
3,456,117	+		SO3306	0.26	+1.6
3,456,137	-		SO3306	0.27	-0.6
3,456,180	+		SO3306	0.28	+0.0
3,456,180	+		SO3306	0.28	+0.2
3,456,186	+		SO3306	0.28	+0.4
3,456,187	+		SO3306	0.28	+2.0
3,456,188	-		SO3306	0.28	+1.6
3,456,188	-		SO3306	0.28	+2.2
3,456,188	-		SO3306	0.28	-0.0
3,456,188	-		SO3306	0.28	-0.8