Strain Fitness in Shewanella oneidensis MR-1 around SO2746

Experiment: M5 outer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttRNA-Lys-6 and tRNA-Lys-5 are separated by 161 nucleotidestRNA-Lys-5 and tRNA-Lys-4 are separated by 33 nucleotidestRNA-Lys-4 and tRNA-Lys-3 are separated by 33 nucleotidestRNA-Lys-3 and tRNA-Lys-8 are separated by 33 nucleotidestRNA-Lys-8 and tRNA-Lys-2 are separated by 33 nucleotidestRNA-Lys-2 and tRNA-Lys-1 are separated by 54 nucleotidestRNA-Lys-1 and SO2746 are separated by 142 nucleotidesSO2746 and pal are separated by 24 nucleotidespal and tolB are separated by 46 nucleotides SO_t056: tRNA-Lys-6 - tRNA-Lys (RefSeq), at 2,866,798 to 2,866,873 tRNA-Lys-6 SO_t057: tRNA-Lys-5 - tRNA-Lys (RefSeq), at 2,867,035 to 2,867,110 tRNA-Lys-5 SO_t058: tRNA-Lys-4 - tRNA-Lys (RefSeq), at 2,867,144 to 2,867,219 tRNA-Lys-4 SO_t059: tRNA-Lys-3 - tRNA-Lys (RefSeq), at 2,867,253 to 2,867,328 tRNA-Lys-3 SO_t060: tRNA-Lys-8 - tRNA-Lys (RefSeq), at 2,867,362 to 2,867,452 tRNA-Lys-8 SO_t061: tRNA-Lys-2 - tRNA-Lys (RefSeq), at 2,867,486 to 2,867,561 tRNA-Lys-2 SO_t062: tRNA-Lys-1 - tRNA-Lys (RefSeq), at 2,867,616 to 2,867,691 tRNA-Lys-1 SO2746: SO2746 - conserved hypothetical protein (NCBI ptt file), at 2,867,834 to 2,868,586 SO2746 SO2747: pal - peptidoglycan-associated lipoprotein (NCBI ptt file), at 2,868,611 to 2,869,144 pal SO2748: tolB - tolB protein (NCBI ptt file), at 2,869,191 to 2,870,519 tolB Position (kb) 2867 2868 2869Strain fitness (log2 ratio) -2 -1 0 1at 2867.863 kb on + strandat 2868.101 kb on + strand, within SO2746

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Per-strain Table

Position Strand Gene LocusTag Fraction M5 outer
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2,867,863 + -0.4
2,868,101 + SO2746 0.35 -2.6

Or see this region's nucleotide sequence