Experiment: M5 outer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tRNA-Lys-6 and tRNA-Lys-5 are separated by 161 nucleotides tRNA-Lys-5 and tRNA-Lys-4 are separated by 33 nucleotides tRNA-Lys-4 and tRNA-Lys-3 are separated by 33 nucleotides tRNA-Lys-3 and tRNA-Lys-8 are separated by 33 nucleotides tRNA-Lys-8 and tRNA-Lys-2 are separated by 33 nucleotides tRNA-Lys-2 and tRNA-Lys-1 are separated by 54 nucleotides tRNA-Lys-1 and SO2746 are separated by 142 nucleotides SO2746 and pal are separated by 24 nucleotides pal and tolB are separated by 46 nucleotides
SO_t056: tRNA-Lys-6 - tRNA-Lys (RefSeq), at 2,866,798 to 2,866,873
tRNA-Lys-6
SO_t057: tRNA-Lys-5 - tRNA-Lys (RefSeq), at 2,867,035 to 2,867,110
tRNA-Lys-5
SO_t058: tRNA-Lys-4 - tRNA-Lys (RefSeq), at 2,867,144 to 2,867,219
tRNA-Lys-4
SO_t059: tRNA-Lys-3 - tRNA-Lys (RefSeq), at 2,867,253 to 2,867,328
tRNA-Lys-3
SO_t060: tRNA-Lys-8 - tRNA-Lys (RefSeq), at 2,867,362 to 2,867,452
tRNA-Lys-8
SO_t061: tRNA-Lys-2 - tRNA-Lys (RefSeq), at 2,867,486 to 2,867,561
tRNA-Lys-2
SO_t062: tRNA-Lys-1 - tRNA-Lys (RefSeq), at 2,867,616 to 2,867,691
tRNA-Lys-1
SO2746: SO2746 - conserved hypothetical protein (NCBI ptt file), at 2,867,834 to 2,868,586
SO2746
SO2747: pal - peptidoglycan-associated lipoprotein (NCBI ptt file), at 2,868,611 to 2,869,144
pal
SO2748: tolB - tolB protein (NCBI ptt file), at 2,869,191 to 2,870,519
tolB
Position (kb)
2867
2868
2869 Strain fitness (log2 ratio)
-2
-1
0
1 at 2867.863 kb on + strand at 2868.101 kb on + strand, within SO2746
Per-strain Table
Or see this region's nucleotide sequence