Strain Fitness in Shewanella oneidensis MR-1 around SO2360

Experiment: M5 outer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2359 and SO2360 are separated by 22 nucleotidesSO2360 and ccoP are separated by 110 nucleotides SO2359: SO2359 - cation transport ATPase, E1-E2 family (NCBI ptt file), at 2,465,253 to 2,467,652 SO2359 SO2360: SO2360 - conserved hypothetical protein (NCBI ptt file), at 2,467,675 to 2,468,154 SO2360 SO2361: ccoP - cytochrome c oxidase, cbb3-type, subunit III (NCBI ptt file), at 2,468,265 to 2,469,233 ccoP Position (kb) 2467 2468 2469Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2467.085 kb on - strand, within SO2359at 2467.173 kb on + strand, within SO2359at 2467.267 kb on - strand, within SO2359at 2467.381 kb on + strand, within SO2359at 2467.497 kb on - strandat 2467.771 kb on + strand, within SO2360at 2468.020 kb on + strand, within SO2360at 2468.135 kb on - strandat 2468.504 kb on - strand, within ccoPat 2468.934 kb on + strand, within ccoPat 2468.953 kb on - strand, within ccoPat 2468.965 kb on - strand, within ccoPat 2468.965 kb on - strand, within ccoPat 2468.994 kb on + strand, within ccoPat 2469.002 kb on - strand, within ccoPat 2469.051 kb on - strand, within ccoPat 2469.089 kb on + strand, within ccoPat 2469.097 kb on - strand, within ccoP

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Per-strain Table

Position Strand Gene LocusTag Fraction M5 outer
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2,467,085 - SO2359 0.76 -0.0
2,467,173 + SO2359 0.80 +1.2
2,467,267 - SO2359 0.84 +2.0
2,467,381 + SO2359 0.89 +2.9
2,467,497 - +1.8
2,467,771 + SO2360 0.20 +1.8
2,468,020 + SO2360 0.72 +2.7
2,468,135 - +1.9
2,468,504 - ccoP SO2361 0.25 +1.6
2,468,934 + ccoP SO2361 0.69 -0.5
2,468,953 - ccoP SO2361 0.71 +2.2
2,468,965 - ccoP SO2361 0.72 +5.0
2,468,965 - ccoP SO2361 0.72 +0.2
2,468,994 + ccoP SO2361 0.75 +4.2
2,469,002 - ccoP SO2361 0.76 +0.8
2,469,051 - ccoP SO2361 0.81 +1.8
2,469,089 + ccoP SO2361 0.85 +1.0
2,469,097 - ccoP SO2361 0.86 +1.8

Or see this region's nucleotide sequence