Experiment: M5 outer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nqrF-1 and SO0908 are separated by 97 nucleotides SO0908 and SO0909 are separated by 42 nucleotides SO0909 and SO0910 are separated by 352 nucleotides
SO0907: nqrF-1 - NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file), at 933,603 to 934,820
nqrF-1
SO0908: SO0908 - conserved domain protein (NCBI ptt file), at 934,918 to 935,235
SO0908
SO0909: SO0909 - hypothetical protein (NCBI ptt file), at 935,278 to 935,841
SO0909
SO0910: SO0910 - hypothetical protein (NCBI ptt file), at 936,194 to 937,228
SO0910
Position (kb) 934
935
936 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 934.195 kb on + strand, within nqrF-1 at 934.339 kb on + strand, within nqrF-1 at 934.364 kb on + strand, within nqrF-1 at 934.486 kb on - strand, within nqrF-1 at 934.600 kb on + strand, within nqrF-1 at 934.624 kb on - strand, within nqrF-1 at 934.631 kb on + strand, within nqrF-1 at 934.641 kb on + strand, within nqrF-1 at 934.650 kb on + strand, within nqrF-1 at 934.724 kb on + strand at 934.731 kb on + strand at 934.862 kb on - strand at 934.990 kb on - strand, within SO0908 at 935.028 kb on + strand, within SO0908 at 935.028 kb on + strand, within SO0908 at 935.036 kb on - strand, within SO0908 at 935.036 kb on - strand, within SO0908 at 935.036 kb on - strand, within SO0908 at 935.036 kb on - strand, within SO0908 at 935.192 kb on + strand, within SO0908 at 935.197 kb on + strand, within SO0908 at 935.226 kb on - strand at 935.226 kb on - strand at 935.226 kb on - strand at 935.249 kb on - strand at 935.274 kb on - strand at 935.334 kb on + strand at 935.381 kb on + strand, within SO0909 at 935.390 kb on + strand, within SO0909 at 935.390 kb on + strand, within SO0909 at 935.397 kb on + strand, within SO0909 at 935.400 kb on + strand, within SO0909 at 935.415 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.555 kb on + strand, within SO0909 at 935.577 kb on + strand, within SO0909 at 935.595 kb on - strand, within SO0909 at 935.664 kb on - strand, within SO0909 at 935.736 kb on - strand, within SO0909 at 935.774 kb on + strand, within SO0909 at 935.793 kb on + strand at 935.801 kb on - strand at 935.921 kb on - strand at 935.953 kb on - strand at 936.182 kb on + strand at 936.182 kb on + strand at 936.200 kb on - strand at 936.220 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M5 outer remove 934,195 + nqrF-1 SO0907 0.49 -1.2 934,339 + nqrF-1 SO0907 0.60 -0.8 934,364 + nqrF-1 SO0907 0.62 -1.1 934,486 - nqrF-1 SO0907 0.72 +1.7 934,600 + nqrF-1 SO0907 0.82 -3.1 934,624 - nqrF-1 SO0907 0.84 -2.0 934,631 + nqrF-1 SO0907 0.84 -1.3 934,641 + nqrF-1 SO0907 0.85 +1.0 934,650 + nqrF-1 SO0907 0.86 -1.6 934,724 + +0.1 934,731 + -1.3 934,862 - -0.5 934,990 - SO0908 0.23 +0.0 935,028 + SO0908 0.35 -0.3 935,028 + SO0908 0.35 +0.0 935,036 - SO0908 0.37 +3.0 935,036 - SO0908 0.37 -1.3 935,036 - SO0908 0.37 +2.2 935,036 - SO0908 0.37 -1.5 935,192 + SO0908 0.86 +0.8 935,197 + SO0908 0.88 -0.1 935,226 - -0.7 935,226 - +1.6 935,226 - -1.5 935,249 - -0.3 935,274 - +3.0 935,334 + +2.5 935,381 + SO0909 0.18 +0.5 935,390 + SO0909 0.20 +0.4 935,390 + SO0909 0.20 +0.3 935,397 + SO0909 0.21 -0.1 935,400 + SO0909 0.22 +0.8 935,415 + SO0909 0.24 +0.6 935,523 + SO0909 0.43 +0.1 935,523 + SO0909 0.43 -2.3 935,523 + SO0909 0.43 +0.1 935,523 + SO0909 0.43 -0.9 935,531 - SO0909 0.45 +0.5 935,531 - SO0909 0.45 -0.3 935,531 - SO0909 0.45 +0.3 935,531 - SO0909 0.45 -1.3 935,531 - SO0909 0.45 +0.2 935,531 - SO0909 0.45 -0.4 935,531 - SO0909 0.45 -1.8 935,531 - SO0909 0.45 +1.4 935,531 - SO0909 0.45 +1.0 935,531 - SO0909 0.45 +1.3 935,531 - SO0909 0.45 +0.3 935,531 - SO0909 0.45 +1.2 935,555 + SO0909 0.49 -1.4 935,577 + SO0909 0.53 +0.6 935,595 - SO0909 0.56 -0.2 935,664 - SO0909 0.68 -0.3 935,736 - SO0909 0.81 +0.5 935,774 + SO0909 0.88 -1.0 935,793 + -1.5 935,801 - -0.7 935,921 - +0.1 935,953 - -0.0 936,182 + -0.5 936,182 + -1.0 936,200 - -0.7 936,220 - -1.2
Or see this region's nucleotide sequence