Experiment: M5 outer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nqrA-1 and nqrB-1 overlap by 1 nucleotides nqrB-1 and nqrC-1 overlap by 11 nucleotides nqrC-1 and nqrD-1 overlap by 4 nucleotides
SO0902: nqrA-1 - NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file), at 928,930 to 930,300
nqrA-1
SO0903: nqrB-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file), at 930,300 to 931,532
nqrB-1
SO0904: nqrC-1 - NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit (NCBI ptt file), at 931,522 to 932,316
nqrC-1
SO0905: nqrD-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file), at 932,313 to 932,933
nqrD-1
Position (kb) 930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 929.318 kb on - strand, within nqrA-1 at 929.324 kb on + strand, within nqrA-1 at 929.331 kb on + strand, within nqrA-1 at 929.336 kb on + strand, within nqrA-1 at 929.339 kb on - strand, within nqrA-1 at 929.339 kb on - strand, within nqrA-1 at 929.458 kb on + strand, within nqrA-1 at 929.466 kb on - strand, within nqrA-1 at 929.545 kb on + strand, within nqrA-1 at 929.553 kb on - strand, within nqrA-1 at 929.553 kb on - strand, within nqrA-1 at 929.570 kb on + strand, within nqrA-1 at 929.603 kb on - strand, within nqrA-1 at 929.616 kb on - strand, within nqrA-1 at 929.616 kb on - strand, within nqrA-1 at 929.616 kb on - strand, within nqrA-1 at 929.649 kb on - strand, within nqrA-1 at 929.649 kb on - strand, within nqrA-1 at 929.706 kb on + strand, within nqrA-1 at 929.714 kb on - strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.753 kb on + strand, within nqrA-1 at 929.761 kb on - strand, within nqrA-1 at 929.761 kb on - strand, within nqrA-1 at 929.762 kb on + strand, within nqrA-1 at 929.770 kb on - strand, within nqrA-1 at 929.803 kb on - strand, within nqrA-1 at 929.851 kb on + strand, within nqrA-1 at 929.859 kb on - strand, within nqrA-1 at 929.861 kb on + strand, within nqrA-1 at 929.952 kb on - strand, within nqrA-1 at 930.030 kb on + strand, within nqrA-1 at 930.055 kb on + strand, within nqrA-1 at 930.063 kb on - strand, within nqrA-1 at 930.063 kb on - strand, within nqrA-1 at 930.073 kb on - strand, within nqrA-1 at 930.135 kb on + strand, within nqrA-1 at 930.146 kb on + strand, within nqrA-1 at 930.232 kb on - strand at 930.259 kb on + strand at 930.272 kb on + strand at 930.280 kb on + strand at 930.280 kb on - strand at 930.280 kb on - strand at 930.280 kb on - strand at 930.280 kb on - strand at 930.303 kb on - strand at 930.405 kb on - strand at 930.558 kb on + strand, within nqrB-1 at 930.568 kb on + strand, within nqrB-1 at 930.591 kb on - strand, within nqrB-1 at 930.593 kb on + strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.629 kb on - strand, within nqrB-1 at 930.793 kb on - strand, within nqrB-1 at 930.793 kb on - strand, within nqrB-1 at 930.863 kb on - strand, within nqrB-1 at 930.881 kb on + strand, within nqrB-1 at 930.881 kb on - strand, within nqrB-1 at 930.881 kb on - strand, within nqrB-1 at 931.084 kb on + strand, within nqrB-1 at 931.086 kb on - strand, within nqrB-1 at 931.112 kb on - strand, within nqrB-1 at 931.175 kb on - strand, within nqrB-1 at 931.180 kb on - strand, within nqrB-1 at 931.428 kb on + strand at 931.457 kb on + strand at 931.465 kb on - strand at 931.565 kb on + strand at 931.589 kb on + strand at 931.589 kb on + strand at 931.589 kb on + strand at 931.597 kb on - strand at 931.597 kb on - strand at 931.624 kb on - strand, within nqrC-1 at 931.770 kb on - strand, within nqrC-1 at 931.801 kb on - strand, within nqrC-1 at 931.811 kb on - strand, within nqrC-1 at 931.838 kb on + strand, within nqrC-1 at 931.838 kb on - strand, within nqrC-1 at 931.889 kb on + strand, within nqrC-1 at 931.890 kb on + strand, within nqrC-1 at 931.899 kb on - strand, within nqrC-1 at 932.045 kb on - strand, within nqrC-1 at 932.075 kb on + strand, within nqrC-1 at 932.136 kb on + strand, within nqrC-1 at 932.298 kb on + strand at 932.306 kb on - strand at 932.385 kb on + strand, within nqrD-1 at 932.414 kb on + strand, within nqrD-1 at 932.427 kb on - strand, within nqrD-1 at 932.446 kb on + strand, within nqrD-1 at 932.510 kb on + strand, within nqrD-1 at 932.510 kb on + strand, within nqrD-1
Per-strain Table
Position Strand Gene LocusTag Fraction M5 outer remove 929,318 - nqrA-1 SO0902 0.28 -0.4 929,324 + nqrA-1 SO0902 0.29 +1.6 929,331 + nqrA-1 SO0902 0.29 +1.4 929,336 + nqrA-1 SO0902 0.30 -0.3 929,339 - nqrA-1 SO0902 0.30 -1.7 929,339 - nqrA-1 SO0902 0.30 -2.8 929,458 + nqrA-1 SO0902 0.39 +1.8 929,466 - nqrA-1 SO0902 0.39 +0.0 929,545 + nqrA-1 SO0902 0.45 -0.1 929,553 - nqrA-1 SO0902 0.45 -0.2 929,553 - nqrA-1 SO0902 0.45 -0.8 929,570 + nqrA-1 SO0902 0.47 -0.5 929,603 - nqrA-1 SO0902 0.49 +0.1 929,616 - nqrA-1 SO0902 0.50 -1.2 929,616 - nqrA-1 SO0902 0.50 +0.1 929,616 - nqrA-1 SO0902 0.50 -1.6 929,649 - nqrA-1 SO0902 0.52 +0.7 929,649 - nqrA-1 SO0902 0.52 -0.5 929,706 + nqrA-1 SO0902 0.57 +2.0 929,714 - nqrA-1 SO0902 0.57 -1.5 929,721 + nqrA-1 SO0902 0.58 -0.7 929,721 + nqrA-1 SO0902 0.58 -1.7 929,721 + nqrA-1 SO0902 0.58 -1.5 929,721 + nqrA-1 SO0902 0.58 -1.3 929,721 + nqrA-1 SO0902 0.58 -1.0 929,721 + nqrA-1 SO0902 0.58 -0.7 929,753 + nqrA-1 SO0902 0.60 -0.9 929,761 - nqrA-1 SO0902 0.61 -0.5 929,761 - nqrA-1 SO0902 0.61 +1.1 929,762 + nqrA-1 SO0902 0.61 -2.7 929,770 - nqrA-1 SO0902 0.61 +1.0 929,803 - nqrA-1 SO0902 0.64 -0.4 929,851 + nqrA-1 SO0902 0.67 -0.1 929,859 - nqrA-1 SO0902 0.68 +0.5 929,861 + nqrA-1 SO0902 0.68 -1.1 929,952 - nqrA-1 SO0902 0.75 -1.7 930,030 + nqrA-1 SO0902 0.80 +0.5 930,055 + nqrA-1 SO0902 0.82 -3.4 930,063 - nqrA-1 SO0902 0.83 -0.2 930,063 - nqrA-1 SO0902 0.83 -2.9 930,073 - nqrA-1 SO0902 0.83 -1.1 930,135 + nqrA-1 SO0902 0.88 +0.4 930,146 + nqrA-1 SO0902 0.89 -2.5 930,232 - -0.6 930,259 + -0.3 930,272 + +0.3 930,280 + -0.7 930,280 - -0.7 930,280 - +1.9 930,280 - -0.2 930,280 - +0.5 930,303 - -0.4 930,405 - -2.2 930,558 + nqrB-1 SO0903 0.21 -1.7 930,568 + nqrB-1 SO0903 0.22 -0.9 930,591 - nqrB-1 SO0903 0.24 +0.2 930,593 + nqrB-1 SO0903 0.24 -0.3 930,601 - nqrB-1 SO0903 0.24 -0.8 930,601 - nqrB-1 SO0903 0.24 -1.7 930,601 - nqrB-1 SO0903 0.24 -1.4 930,601 - nqrB-1 SO0903 0.24 +0.4 930,629 - nqrB-1 SO0903 0.27 +0.3 930,793 - nqrB-1 SO0903 0.40 -0.7 930,793 - nqrB-1 SO0903 0.40 -1.3 930,863 - nqrB-1 SO0903 0.46 -2.7 930,881 + nqrB-1 SO0903 0.47 +0.3 930,881 - nqrB-1 SO0903 0.47 -1.1 930,881 - nqrB-1 SO0903 0.47 +0.2 931,084 + nqrB-1 SO0903 0.64 +0.4 931,086 - nqrB-1 SO0903 0.64 -1.4 931,112 - nqrB-1 SO0903 0.66 -2.9 931,175 - nqrB-1 SO0903 0.71 -1.2 931,180 - nqrB-1 SO0903 0.71 -1.0 931,428 + +0.5 931,457 + -1.3 931,465 - -3.0 931,565 + +3.0 931,589 + -1.9 931,589 + -0.3 931,589 + -0.9 931,597 - +0.8 931,597 - -1.1 931,624 - nqrC-1 SO0904 0.13 -1.4 931,770 - nqrC-1 SO0904 0.31 -1.1 931,801 - nqrC-1 SO0904 0.35 -1.9 931,811 - nqrC-1 SO0904 0.36 -0.8 931,838 + nqrC-1 SO0904 0.40 -2.2 931,838 - nqrC-1 SO0904 0.40 -0.4 931,889 + nqrC-1 SO0904 0.46 -1.4 931,890 + nqrC-1 SO0904 0.46 +1.1 931,899 - nqrC-1 SO0904 0.47 -0.3 932,045 - nqrC-1 SO0904 0.66 -0.6 932,075 + nqrC-1 SO0904 0.70 -0.3 932,136 + nqrC-1 SO0904 0.77 -0.2 932,298 + +0.3 932,306 - -1.2 932,385 + nqrD-1 SO0905 0.12 -2.4 932,414 + nqrD-1 SO0905 0.16 +0.1 932,427 - nqrD-1 SO0905 0.18 -1.5 932,446 + nqrD-1 SO0905 0.21 -0.5 932,510 + nqrD-1 SO0905 0.32 +0.3 932,510 + nqrD-1 SO0905 0.32 -0.9
Or see this region's nucleotide sequence