Experiment: M5 outer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0830 and gshB are separated by 72 nucleotides gshB and SO0832 are separated by 93 nucleotides SO0832 and endA are separated by 8 nucleotides
SO0830: SO0830 - alkaline phosphatase (NCBI ptt file), at 848,099 to 849,463
SO0830
SO0831: gshB - glutathione synthetase (NCBI ptt file), at 849,536 to 850,483
gshB
SO0832: SO0832 - conserved hypothetical protein TIGR00046 (NCBI ptt file), at 850,577 to 851,308
SO0832
SO0833: endA - endonuclease I (NCBI ptt file), at 851,317 to 852,093
endA
Position (kb) 849
850
851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 848.537 kb on - strand, within SO0830 at 848.537 kb on - strand, within SO0830 at 848.539 kb on - strand, within SO0830 at 848.544 kb on - strand, within SO0830 at 848.551 kb on + strand, within SO0830 at 848.559 kb on - strand, within SO0830 at 848.601 kb on + strand, within SO0830 at 848.673 kb on - strand, within SO0830 at 848.689 kb on + strand, within SO0830 at 848.689 kb on + strand, within SO0830 at 848.689 kb on + strand, within SO0830 at 848.697 kb on - strand, within SO0830 at 848.791 kb on - strand, within SO0830 at 848.919 kb on + strand, within SO0830 at 848.952 kb on + strand, within SO0830 at 848.952 kb on + strand, within SO0830 at 849.051 kb on - strand, within SO0830 at 849.086 kb on + strand, within SO0830 at 849.181 kb on + strand, within SO0830 at 849.300 kb on - strand, within SO0830 at 849.307 kb on + strand, within SO0830 at 849.356 kb on + strand at 849.389 kb on - strand at 849.463 kb on + strand at 849.466 kb on - strand at 849.526 kb on - strand at 849.708 kb on - strand, within gshB at 849.754 kb on - strand, within gshB at 849.811 kb on + strand, within gshB at 849.820 kb on - strand, within gshB at 849.926 kb on + strand, within gshB at 850.333 kb on + strand, within gshB at 850.397 kb on - strand at 850.462 kb on + strand at 850.529 kb on + strand at 850.562 kb on - strand at 850.622 kb on + strand at 850.630 kb on - strand at 850.630 kb on - strand at 850.632 kb on + strand at 850.640 kb on - strand at 850.666 kb on - strand, within SO0832 at 850.763 kb on - strand, within SO0832 at 850.768 kb on + strand, within SO0832 at 850.783 kb on + strand, within SO0832 at 851.007 kb on - strand, within SO0832 at 851.007 kb on - strand, within SO0832 at 851.064 kb on + strand, within SO0832 at 851.162 kb on + strand, within SO0832 at 851.183 kb on - strand, within SO0832 at 851.207 kb on - strand, within SO0832 at 851.218 kb on - strand, within SO0832 at 851.441 kb on + strand, within endA at 851.443 kb on - strand, within endA
Per-strain Table
Position Strand Gene LocusTag Fraction M5 outer remove 848,537 - SO0830 0.32 +0.0 848,537 - SO0830 0.32 -0.4 848,539 - SO0830 0.32 -0.8 848,544 - SO0830 0.33 -0.3 848,551 + SO0830 0.33 +1.4 848,559 - SO0830 0.34 +1.8 848,601 + SO0830 0.37 +1.3 848,673 - SO0830 0.42 -2.1 848,689 + SO0830 0.43 +1.3 848,689 + SO0830 0.43 -0.5 848,689 + SO0830 0.43 +3.5 848,697 - SO0830 0.44 +3.3 848,791 - SO0830 0.51 +1.2 848,919 + SO0830 0.60 -0.5 848,952 + SO0830 0.62 -1.0 848,952 + SO0830 0.62 -0.4 849,051 - SO0830 0.70 +0.2 849,086 + SO0830 0.72 +1.2 849,181 + SO0830 0.79 +0.6 849,300 - SO0830 0.88 -1.1 849,307 + SO0830 0.88 +0.5 849,356 + -2.1 849,389 - +1.3 849,463 + +1.5 849,466 - -0.1 849,526 - +1.0 849,708 - gshB SO0831 0.18 -0.9 849,754 - gshB SO0831 0.23 -1.5 849,811 + gshB SO0831 0.29 -2.3 849,820 - gshB SO0831 0.30 -1.0 849,926 + gshB SO0831 0.41 +0.2 850,333 + gshB SO0831 0.84 -2.0 850,397 - -0.9 850,462 + -0.5 850,529 + +0.1 850,562 - +2.1 850,622 + +0.5 850,630 - -1.3 850,630 - -0.8 850,632 + -2.5 850,640 - -2.6 850,666 - SO0832 0.12 -3.6 850,763 - SO0832 0.25 -0.9 850,768 + SO0832 0.26 -2.9 850,783 + SO0832 0.28 -0.4 851,007 - SO0832 0.59 -1.2 851,007 - SO0832 0.59 -1.2 851,064 + SO0832 0.67 -0.4 851,162 + SO0832 0.80 +0.0 851,183 - SO0832 0.83 -0.9 851,207 - SO0832 0.86 +0.1 851,218 - SO0832 0.88 -1.4 851,441 + endA SO0833 0.16 -0.4 851,443 - endA SO0833 0.16 +0.2
Or see this region's nucleotide sequence