Experiment: M5 outer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0539 and SO0540 are separated by 106 nucleotides SO0540 and SO0541 are separated by 123 nucleotides
SO0539: SO0539 - transporter, putative (NCBI ptt file), at 558,328 to 559,590
SO0539
SO0540: SO0540 - conserved hypothetical protein (NCBI ptt file), at 559,697 to 560,500
SO0540
SO0541: SO0541 - metallo-beta-lactamase family protein (NCBI ptt file), at 560,624 to 562,060
SO0541
Position (kb) 559
560
561 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 558.756 kb on + strand, within SO0539 at 558.784 kb on - strand, within SO0539 at 558.798 kb on + strand, within SO0539 at 558.826 kb on - strand, within SO0539 at 558.921 kb on + strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 559.115 kb on - strand, within SO0539 at 559.159 kb on + strand, within SO0539 at 559.167 kb on - strand, within SO0539 at 559.167 kb on - strand, within SO0539 at 559.230 kb on - strand, within SO0539 at 559.331 kb on + strand, within SO0539 at 559.331 kb on + strand, within SO0539 at 559.331 kb on + strand, within SO0539 at 559.339 kb on - strand, within SO0539 at 559.403 kb on + strand, within SO0539 at 559.418 kb on + strand, within SO0539 at 559.469 kb on + strand at 559.469 kb on + strand at 559.602 kb on - strand at 559.624 kb on - strand at 559.635 kb on - strand at 559.655 kb on + strand at 559.655 kb on + strand at 559.656 kb on + strand at 559.663 kb on - strand at 559.663 kb on - strand at 559.673 kb on + strand at 559.706 kb on + strand at 560.024 kb on + strand, within SO0540 at 560.112 kb on + strand, within SO0540 at 560.112 kb on + strand, within SO0540 at 560.119 kb on + strand, within SO0540 at 560.281 kb on - strand, within SO0540 at 560.372 kb on + strand, within SO0540 at 560.451 kb on - strand at 560.453 kb on + strand at 560.759 kb on + strand at 560.781 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.803 kb on - strand, within SO0541 at 560.803 kb on - strand, within SO0541 at 560.886 kb on + strand, within SO0541 at 560.886 kb on + strand, within SO0541 at 560.886 kb on + strand, within SO0541 at 560.894 kb on - strand, within SO0541 at 560.894 kb on - strand, within SO0541 at 560.894 kb on - strand, within SO0541 at 560.894 kb on - strand, within SO0541 at 560.921 kb on + strand, within SO0541 at 560.971 kb on + strand, within SO0541 at 561.020 kb on - strand, within SO0541 at 561.182 kb on + strand, within SO0541 at 561.190 kb on - strand, within SO0541 at 561.356 kb on - strand, within SO0541 at 561.467 kb on - strand, within SO0541
Per-strain Table
Position Strand Gene LocusTag Fraction M5 outer remove 558,756 + SO0539 0.34 -1.8 558,784 - SO0539 0.36 -1.5 558,798 + SO0539 0.37 +3.1 558,826 - SO0539 0.39 +1.1 558,921 + SO0539 0.47 +1.0 558,934 - SO0539 0.48 -3.0 558,934 - SO0539 0.48 +0.6 558,934 - SO0539 0.48 -1.2 559,115 - SO0539 0.62 -0.8 559,159 + SO0539 0.66 +0.1 559,167 - SO0539 0.66 +0.8 559,167 - SO0539 0.66 +0.5 559,230 - SO0539 0.71 -0.2 559,331 + SO0539 0.79 +0.5 559,331 + SO0539 0.79 +1.3 559,331 + SO0539 0.79 +3.1 559,339 - SO0539 0.80 -0.5 559,403 + SO0539 0.85 +1.1 559,418 + SO0539 0.86 -0.5 559,469 + -1.8 559,469 + -0.4 559,602 - +1.0 559,624 - +2.1 559,635 - -0.5 559,655 + -0.1 559,655 + +0.2 559,656 + -1.4 559,663 - -0.0 559,663 - +0.8 559,673 + +0.0 559,706 + +1.7 560,024 + SO0540 0.41 -1.7 560,112 + SO0540 0.52 -1.7 560,112 + SO0540 0.52 -0.4 560,119 + SO0540 0.52 +0.3 560,281 - SO0540 0.73 +0.0 560,372 + SO0540 0.84 -1.9 560,451 - -0.1 560,453 + +1.8 560,759 + +1.1 560,781 + SO0541 0.11 +1.2 560,795 + SO0541 0.12 +1.5 560,795 + SO0541 0.12 -1.0 560,795 + SO0541 0.12 -0.3 560,795 + SO0541 0.12 -0.2 560,795 + SO0541 0.12 -1.2 560,795 + SO0541 0.12 -0.8 560,795 + SO0541 0.12 -1.0 560,803 - SO0541 0.12 -1.4 560,803 - SO0541 0.12 +1.2 560,886 + SO0541 0.18 -0.6 560,886 + SO0541 0.18 +1.3 560,886 + SO0541 0.18 +0.9 560,894 - SO0541 0.19 +0.9 560,894 - SO0541 0.19 -0.6 560,894 - SO0541 0.19 -0.7 560,894 - SO0541 0.19 -0.4 560,921 + SO0541 0.21 +1.4 560,971 + SO0541 0.24 -0.7 561,020 - SO0541 0.28 +0.2 561,182 + SO0541 0.39 -0.0 561,190 - SO0541 0.39 +0.3 561,356 - SO0541 0.51 +0.0 561,467 - SO0541 0.59 +1.3
Or see this region's nucleotide sequence