Experiment: M5 outer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0535 and SO0536 are separated by 9 nucleotides SO0536 and gapA-1 are separated by 190 nucleotides gapA-1 and SO0539 are separated by 9 nucleotides
SO0535: SO0535 - conserved hypothetical protein (NCBI ptt file), at 555,873 to 556,868
SO0535
SO0536: SO0536 - redox-active disulfide protein 2 (NCBI ptt file), at 556,878 to 557,114
SO0536
SO0538: gapA-1 - glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file), at 557,305 to 558,318
gapA-1
SO0539: SO0539 - transporter, putative (NCBI ptt file), at 558,328 to 559,590
SO0539
Position (kb) 557
558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 556.308 kb on - strand, within SO0535 at 556.308 kb on - strand, within SO0535 at 556.308 kb on - strand, within SO0535 at 556.364 kb on + strand, within SO0535 at 556.374 kb on + strand, within SO0535 at 556.413 kb on + strand, within SO0535 at 556.421 kb on + strand, within SO0535 at 556.436 kb on + strand, within SO0535 at 556.444 kb on - strand, within SO0535 at 556.522 kb on + strand, within SO0535 at 556.522 kb on + strand, within SO0535 at 556.527 kb on + strand, within SO0535 at 556.534 kb on + strand, within SO0535 at 556.547 kb on - strand, within SO0535 at 556.552 kb on - strand, within SO0535 at 556.584 kb on + strand, within SO0535 at 556.584 kb on + strand, within SO0535 at 556.586 kb on - strand, within SO0535 at 556.590 kb on + strand, within SO0535 at 556.590 kb on + strand, within SO0535 at 556.635 kb on - strand, within SO0535 at 556.729 kb on + strand, within SO0535 at 556.796 kb on + strand at 556.804 kb on - strand at 556.804 kb on - strand at 557.054 kb on + strand, within SO0536 at 557.054 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.076 kb on - strand, within SO0536 at 557.076 kb on - strand, within SO0536 at 557.076 kb on - strand, within SO0536 at 557.145 kb on + strand at 557.153 kb on - strand at 557.153 kb on - strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.358 kb on + strand at 557.477 kb on - strand, within gapA-1 at 557.477 kb on - strand, within gapA-1 at 557.543 kb on - strand, within gapA-1 at 557.574 kb on - strand, within gapA-1 at 557.695 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.915 kb on + strand, within gapA-1 at 557.923 kb on - strand, within gapA-1 at 557.971 kb on - strand, within gapA-1 at 557.982 kb on + strand, within gapA-1 at 557.990 kb on - strand, within gapA-1 at 558.012 kb on + strand, within gapA-1 at 558.110 kb on - strand, within gapA-1 at 558.215 kb on - strand, within gapA-1 at 558.352 kb on - strand at 558.436 kb on + strand at 558.601 kb on - strand, within SO0539 at 558.650 kb on - strand, within SO0539 at 558.675 kb on + strand, within SO0539 at 558.756 kb on + strand, within SO0539 at 558.784 kb on - strand, within SO0539 at 558.798 kb on + strand, within SO0539 at 558.826 kb on - strand, within SO0539 at 558.921 kb on + strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 559.115 kb on - strand, within SO0539 at 559.159 kb on + strand, within SO0539 at 559.167 kb on - strand, within SO0539 at 559.167 kb on - strand, within SO0539 at 559.230 kb on - strand, within SO0539
Per-strain Table
Position Strand Gene LocusTag Fraction M5 outer remove 556,308 - SO0535 0.44 +0.1 556,308 - SO0535 0.44 -0.6 556,308 - SO0535 0.44 -1.2 556,364 + SO0535 0.49 +2.5 556,374 + SO0535 0.50 +0.1 556,413 + SO0535 0.54 -1.7 556,421 + SO0535 0.55 +0.9 556,436 + SO0535 0.57 +0.1 556,444 - SO0535 0.57 -0.5 556,522 + SO0535 0.65 -0.8 556,522 + SO0535 0.65 -1.2 556,527 + SO0535 0.66 -2.8 556,534 + SO0535 0.66 +0.3 556,547 - SO0535 0.68 -0.2 556,552 - SO0535 0.68 -1.1 556,584 + SO0535 0.71 -0.3 556,584 + SO0535 0.71 +0.8 556,586 - SO0535 0.72 -1.3 556,590 + SO0535 0.72 +1.2 556,590 + SO0535 0.72 -0.5 556,635 - SO0535 0.77 -2.4 556,729 + SO0535 0.86 -1.1 556,796 + -0.8 556,804 - +0.4 556,804 - -1.4 557,054 + SO0536 0.74 +0.1 557,054 + SO0536 0.74 -0.9 557,068 + SO0536 0.80 +0.3 557,068 + SO0536 0.80 +0.1 557,068 + SO0536 0.80 +0.8 557,068 + SO0536 0.80 +2.1 557,076 - SO0536 0.84 +0.7 557,076 - SO0536 0.84 -0.2 557,076 - SO0536 0.84 -0.4 557,145 + -2.3 557,153 - +2.1 557,153 - -0.7 557,348 + -1.7 557,348 + +2.7 557,348 + -0.7 557,348 + +0.8 557,348 + -0.4 557,356 - +0.3 557,356 - +0.8 557,356 - +0.3 557,356 - +0.7 557,356 - -0.3 557,356 - -1.5 557,358 + +0.7 557,477 - gapA-1 SO0538 0.17 -0.9 557,477 - gapA-1 SO0538 0.17 +1.9 557,543 - gapA-1 SO0538 0.23 -0.1 557,574 - gapA-1 SO0538 0.27 -0.9 557,695 + gapA-1 SO0538 0.38 +1.9 557,884 + gapA-1 SO0538 0.57 -0.0 557,884 + gapA-1 SO0538 0.57 +0.1 557,884 + gapA-1 SO0538 0.57 -0.6 557,884 + gapA-1 SO0538 0.57 +0.3 557,884 + gapA-1 SO0538 0.57 -1.1 557,892 - gapA-1 SO0538 0.58 +0.5 557,892 - gapA-1 SO0538 0.58 -1.0 557,892 - gapA-1 SO0538 0.58 +0.1 557,915 + gapA-1 SO0538 0.60 +0.9 557,923 - gapA-1 SO0538 0.61 +1.0 557,971 - gapA-1 SO0538 0.66 +0.6 557,982 + gapA-1 SO0538 0.67 +5.1 557,990 - gapA-1 SO0538 0.68 +1.2 558,012 + gapA-1 SO0538 0.70 -1.5 558,110 - gapA-1 SO0538 0.79 +0.5 558,215 - gapA-1 SO0538 0.90 -0.1 558,352 - -0.2 558,436 + +1.0 558,601 - SO0539 0.22 +1.4 558,650 - SO0539 0.25 +0.8 558,675 + SO0539 0.27 +1.3 558,756 + SO0539 0.34 -1.8 558,784 - SO0539 0.36 -1.5 558,798 + SO0539 0.37 +3.1 558,826 - SO0539 0.39 +1.1 558,921 + SO0539 0.47 +1.0 558,934 - SO0539 0.48 -3.0 558,934 - SO0539 0.48 +0.6 558,934 - SO0539 0.48 -1.2 559,115 - SO0539 0.62 -0.8 559,159 + SO0539 0.66 +0.1 559,167 - SO0539 0.66 +0.8 559,167 - SO0539 0.66 +0.5 559,230 - SO0539 0.71 -0.2
Or see this region's nucleotide sequence